Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0587 ATGGCTCTCTCTATTGCTTCCACTGCGCTCTCAACCCTCCCAATCAGAGAATCTTACAACAAATGTTTTCCCGGAAAATTCACTACAACATCCCTCCGAGGTAGTACCTTTTTTAATGCAACTAAAGGTGTCTCAAGCGTCTGTAAACCACTTCCTCCTGATAGACCATTGTGGTTCCCCGGCAGTACCGCTCCGGAGTGGCTCGATGGCAGCCTTCCTGGTGATTTTGGCTTTGATCCACTTGGATTAGGTTCGGACCCAGAGTTGCTAAAATGGTTCGCACAAGCAGAGCTAATGCACGCAAGATGGGCAATGCTAGCAGTAACCGGAATCCTCGTTCCCGAATGGCTGGAAACCTTAAAAATCATCGAAAACTTCTCGTGGTTCGATGCCGGATCCCGAGAATATTTCACAGACCCGACAACCTTACTGGTCGTACAATTAGGTTTAATGGGATGGGTGGAAGGAAGGAGATGGGCAGACATGATTAACCCAGGATGCGTGGACGTGGAATTGAAACATCCTCATAAGAAAAACCCGATACCGGACGTGGGTTATCCGGGCGGGTTCTGGTTCGACCCGTTAATGTGGGGAAGAGGGTCGCCGGAGCCGGTGATGGTGCTGAGAACGAAGGAGATAAAGAATGGGAGGCTGGCGATGCTGGCTTTTGTGGGGATGTGTTTTCAAGCCGTTTATACGGGACAAGGCCCTCTTGATAATCTTTCCGCTCATCTTGCGGATCCTGGTCATTGCAATATCTTCTCGGCATTCACTTCGGGTTGA 783 49.68 MALSIASTALSTLPIRESYNKCFPGKFTTTSLRGSTFFNATKGVSSVCKPLPPDRPLWFPGSTAPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVTGILVPEWLETLKIIENFSWFDAGSREYFTDPTTLLVVQLGLMGWVEGRRWADMINPGCVDVELKHPHKKNPIPDVGYPGGFWFDPLMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGMCFQAVYTGQGPLDNLSAHLADPGHCNIFSAFTSG 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42695706 42697641 + evm.model.ptg000008l.948 HCH8g0587 549685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0587 260 SUPERFAMILY Chlorophyll a-b binding protein 54 258 - -
HCH8g0587 260 FunFam Chlorophyll a-b binding protein, chloroplastic 65 250 - -
HCH8g0587 260 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 42 255 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
HCH8g0587 260 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
HCH8g0587 260 Gene3D Chlorophyll a/b binding protein domain 65 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1146 HCH-Chr1:58915362 HCH8g0587 HCH-Chr8:42695706 7.80E-83 dispersed
HCH4g1874 HCH-Chr4:49763631 HCH8g0587 HCH-Chr8:42695706 5.20E-36 dispersed
HCH8g0373 HCH-Chr8:33885483 HCH8g0587 HCH-Chr8:42695706 1.00E-37 dispersed
HCH8g0587 HCH-Chr8:42695706 HCH9g0770 HCH-Chr9:5266398 4.30E-38 dispersed
HCH8g0587 HCH-Chr8:42695706 HCH8g1293 HCH-Chr8:48037477 3.10E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0587 K08908 - vvi:100268126 444.121