Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0593 ATGGCTCCGGGTTCGGATAATTCCCTGCAGGCAATCCGTTACAGCCGTGGCTCACTGCAGCTGCTTGATCAGAGAAAGCTCCCTCTCGAATCTGTTTATTTGGAGATCAAGGATGCAACGGATGGATGGCATGCAATTAAGGATATGGTTGTACGTGGAGCGCCTGCTATTGCTATTGCAGCAGCCCTTGCTTTGGCAGTAGAAGTGCATAACTTGGACACTTTTAGTGGGACATCCAGTGATGCAGCTTCCTTCATTGGGACAAAATTGGAATACTTGGTCTCCAGCCGGCCAACTGCTGTAAATCTTGCCGATGCTGCTACAAAACTTCAAGAAATTGTATCAGAGGCTGCTGCTAATGTTTCTGAAGCCAAGAGTGTCTTCCAAGCATACGTAGAGGCTGCTGAAATAATGTTAAAGGATGATGTTGAGTCAAATAAAGCCATTGGGTCTTATGGAGCAACTTACATCCTTGATCAACAAAAATCGTTAGACAGGATTTCTGTTCTAACGCATTGCAACACTGGCAGCCTAGCTACAGCTGGATATGGTACTGCCCTTGGTGTAATTCGTGCGCTTCACACTGCAGGTGTCTTAGAAAGGGCATACTGTACTGAAACAAGGCCATTTAATCAAGGATCTAGACTCACAGCCTATGAGTTGGTTCATGAAAAGATACCCGCTACTCTGATAGCAGATTCTGCTGCAGCTGCATTGATGAAATTTGGAAGGGTGAATGCGGTTGTAGTTGGGGCCGATCGTGTTGCTGCGAATGGTGATACTGCAAACAAGATAGGAACCTATAGTGTTGCCTTGTGTGCAATGCACCACAAGATTCCATTTTTCGTGGCTGCACCATTGACTTCCATAGACTTGTCCCTTTCTTCTGGAGATGAAATCGTTATAGAGGAAAGGTCTCCCATAGAGTTGTTGAACTCACGTGGTGGTCTTGGGGAACAAGTGGCTGCATCTGGTATCGATGTCTGGAACCCTGCTTTTGACGTTACTCCTGCTCATCTGATTTCTGGAATCATAACGGAAAAGGGAGTCATCACAAAGGTGGGTTCTGAGACTTTCAACATAAAGGATTTCATACGAAAAACAGCAGGGGCATGTGGGTAG 1122 45.81 MAPGSDNSLQAIRYSRGSLQLLDQRKLPLESVYLEIKDATDGWHAIKDMVVRGAPAIAIAAALALAVEVHNLDTFSGTSSDAASFIGTKLEYLVSSRPTAVNLADAATKLQEIVSEAAANVSEAKSVFQAYVEAAEIMLKDDVESNKAIGSYGATYILDQQKSLDRISVLTHCNTGSLATAGYGTALGVIRALHTAGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSVALCAMHHKIPFFVAAPLTSIDLSLSSGDEIVIEERSPIELLNSRGGLGEQVAASGIDVWNPAFDVTPAHLISGIITEKGVITKVGSETFNIKDFIRKTAGACG 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42734705 42738625 + evm.model.ptg000008l.942 HCH8g0593 549691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0593 373 Gene3D - 165 366 IPR042529 -
HCH8g0593 373 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 10 353 IPR005251 -
HCH8g0593 373 FunFam Methylthioribose-1-phosphate isomerase 165 362 - -
HCH8g0593 373 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 9 362 IPR005251 -
HCH8g0593 373 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 7 368 - GO:0019509(PANTHER)|GO:0046523(PANTHER)
HCH8g0593 373 SUPERFAMILY NagB/RpiA/CoA transferase-like 8 353 IPR037171 -
HCH8g0593 373 FunFam Methylthioribose-1-phosphate isomerase 7 199 - -
HCH8g0593 373 Pfam Initiation factor 2 subunit family 51 352 IPR000649 GO:0044237(InterPro)
HCH8g0593 373 Gene3D - 7 164 IPR027363 -
HCH8g0593 373 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 36 353 IPR011559 GO:0044249(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0593 K08963 - csv:101210526 591.267