Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0598 ATGACTGTGAAGAAAATCACATGGAGATCTTTTATTCCATGTGGTCAAATGGATTATCCGAAGAAGGCGAAGGCGACGACGAAGGTGGCGGCGAAACAGACTTCTTTCAAGAGGATTTCTCAAGTGGATTTGAGCAACCCGGGTTCAACTCTTTCTGAGGATTTTTCCATTTCTTTGTTGGGGTCTAATATTCATATGTTCACGTTAGGGGAGCTTAAGGTGATGGCACAGAACTTCTCCACCGCTAATTTCATCGGTGAAGGCGGGTTCGGACCGGTGTATAAGGGCTTTATCGACGACAAGCTTAGACCTGGTCTTAAAGCTCAGCCTGTTGCTATTAAGATTCTGGATTTAGATGGCACTCAAGGCCATAGGGAATGGCTGACAGAAGTGATTTTTCTAGGACAATTGAGGCACCCTCATTTGGTGAAGTTGATAGGATATTGCTGTGAAGATGAACACAGGGTTTTGGTATATGAATATATGCCAAGAGGAAGCTTAGAAAACCAACTTTTTAGAAGATATTCAGTGTCCCTACCATGGTCAACAAGAATGAAAATAGCTCTAGGAGCTGCCAAGGGATTGGCCTTCCTCCATGAAGCTGAAAAACCTGTCATTTATAGAGATTTCAAAGCTTCCAATATCTTGTTGGACTCGGATCACAATCCCAAGCTATCCGATTTCGGATTGGCAAAAGATGGACCAGATGGAGATGACACTCATGTCTCCACAAGAGTTATGGGTACAGAAGGCTATGCTGCCCCAGAATACATCATGACTGGTCACTTGACAGCCATGAGTGATGTTTATAGCTTCGGAGTCGTGCTTCTAGAACTACTAACGGGACGGCGATCGGTCGAGAGGAACCGCCCTCACCGGGAACAAAACTTAGTCGATTACGCTCGACCGATGTTAAACGATCACCGGAAACTTGGCCGGATAATTGATCCAAGGCTCGAAGGACAATACTCAGAGACTGGAGCTAGAAAGGCAGCCGCATTGGCCTACCAATGCCTGAGCCACAGGCCAAAGCAGCGACCTACAATTAGTGAAGTTGTTAAAATCTTAGAGCCTCTCAAGGACTACGAAGACTTGCCCATCGGAACGTTCGTTTTCACCGTGCCGTCGGAGTCGCCGGAGAAAACAGTGAAAGGAAACGAAACGCCGAAAGAACACAAGAGAGAAAATGGGCATCATAGAGATAGACATAACCATCTGAGATACAACAAATCGCCGAATTCATTATCGGAAAATGGGTTGAGGAACGGCGAAAGGAGGACTCCGATGAGCTCGCCGTTGCACCATAAAAGTCGGAGACCATAA 1323 45.96 MTVKKITWRSFIPCGQMDYPKKAKATTKVAAKQTSFKRISQVDLSNPGSTLSEDFSISLLGSNIHMFTLGELKVMAQNFSTANFIGEGGFGPVYKGFIDDKLRPGLKAQPVAIKILDLDGTQGHREWLTEVIFLGQLRHPHLVKLIGYCCEDEHRVLVYEYMPRGSLENQLFRRYSVSLPWSTRMKIALGAAKGLAFLHEAEKPVIYRDFKASNILLDSDHNPKLSDFGLAKDGPDGDDTHVSTRVMGTEGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVERNRPHREQNLVDYARPMLNDHRKLGRIIDPRLEGQYSETGARKAAALAYQCLSHRPKQRPTISEVVKILEPLKDYEDLPIGTFVFTVPSESPEKTVKGNETPKEHKRENGHHRDRHNHLRYNKSPNSLSENGLRNGERRTPMSSPLHHKSRRP 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42773162 42775091 - evm.model.ptg000008l.937 HCH8g0598 549696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0598 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0598 440 Gene3D Phosphorylase Kinase; domain 1 27 161 - -
HCH8g0598 440 SUPERFAMILY Protein kinase-like (PK-like) 54 357 IPR011009 -
HCH8g0598 440 PANTHER OS01G0588500 PROTEIN-RELATED 56 360 IPR050823 -
HCH8g0598 440 Pfam Protein kinase domain 81 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0598 440 FunFam Serine/threonine-protein kinase BIK1 47 161 - -
HCH8g0598 440 MobiDBLite consensus disorder prediction 409 425 - -
HCH8g0598 440 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0598 440 CDD STKc_IRAK 85 359 - -
HCH8g0598 440 Gene3D Transferase(Phosphotransferase) domain 1 162 366 - -
HCH8g0598 440 MobiDBLite consensus disorder prediction 376 440 - -
HCH8g0598 440 FunFam Probable serine/threonine-protein kinase PBL8 162 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1299 HCH-Chr6:47187652 HCH8g0598 HCH-Chr8:42773162 4.90E-124 dispersed
HCH8g0598 HCH-Chr8:42773162 HCH9g0201 HCH-Chr9:1180602 4.50E-112 dispersed
HCH10g0194 HCH-Chr10:1591807 HCH8g0598 HCH-Chr8:42773162 4.40E-115 transposed
HCH11g0003 HCH-Chr11:604050 HCH8g0598 HCH-Chr8:42773162 4.40E-125 transposed
HCH1g1157 HCH-Chr1:58958321 HCH8g0598 HCH-Chr8:42773162 3.20E-27 transposed
HCH8g0556 HCH-Chr8:42335865 HCH8g0598 HCH-Chr8:42773162 8.30E-118 transposed
HCH10g0571 HCH-Chr10:4586761 HCH8g0598 HCH-Chr8:42773162 7.50E-167 wgd
HCH12g0459 HCH-Chr12:2667416 HCH8g0598 HCH-Chr8:42773162 3.40E-125 wgd
HCH4g1516 HCH-Chr4:11572474 HCH8g0598 HCH-Chr8:42773162 1.10E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81693 PF00069 Pkinase 7.10E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0598 - - - 0.0