Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0609 | ATGAGTGCAAGAAGTATGTTTCCATTCACCTCAGCTCAATGGCAGGAACTTGAACATCAAGCTCTCATTTTCAAATACATGGTTTCAGGGATTCCTATACCTCCTGATCTCCTCTTTAGTGTTAAAAGAAGTAACTTGGACTCTCCTTTCACTTCTAAGCTCTTCCCTCACCATCCTCAAAATGTTGGATGGAACTATTTGCAGATGGGTCTAGGGAGGAAAATAGATCCAGAACCAGGAAGATGCAGAAGAACAGATGGAAAGAAATGGAGATGCTCAAAAGAAGCATATCCTGATTCCAAATACTGTGAGAGGCACATGCATAGAGGGAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACAGCAACAAATAACATAAACCATCTCTCAAACGCACCATTTCCTTCTTCCATTACAAATTCCAACGCCAGTAACTCATCCATTCTCTCTTATAAGCCCTTCCCTTCCCAACATTCATCTTCTTCTCCTATTGGAAATAAAATTTCAACCCATGACACGAATACCCTTTTGCTTCTTGAATCTGGTTCTCACTCTGATAGAAATCAAGACTACAGAAATAGGTATGTTTATGGCCTGAAAGAGGGTGTGGATGAGCATGTTTTTTTCTCACAAGAACCTTCTGAAACTACTGGAAGAGGTGGTTTTTGTGCTTCAACAATGGCTGATTCTTGGCAACTAACTCCATTGACAATGAGCAGTTCCTCTGCACATTCAAAACAGAGGAACTGCTCTGTTTTGCAGAGCAGTGATCAGTCTTGCTATCAGTTCCATCAAAGCCTCATAGATCCTTTGAAGCAACAAAAGGGAGATGAATCACAGAAAACCATCCATCGATTCTTTGATGAATGGCCTCCAAAAGAAAGAGAATCATGGCTTGATTTTGATGATAGATCTTCTAATAATGGCTCAGTTTCCACTACTCGCCTCTCAATATCCATTCCCACTGCTTCTAATGACTTTTCCATTTTCAGATCCAAAAATCCATAA | 1023 | 40.18 | MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSVKRSNLDSPFTSKLFPHHPQNVGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTATNNINHLSNAPFPSSITNSNASNSSILSYKPFPSQHSSSSPIGNKISTHDTNTLLLLESGSHSDRNQDYRNRYVYGLKEGVDEHVFFSQEPSETTGRGGFCASTMADSWQLTPLTMSSSSAHSKQRNCSVLQSSDQSCYQFHQSLIDPLKQQKGDESQKTIHRFFDEWPPKERESWLDFDDRSSNNGSVSTTRLSISIPTASNDFSIFRSKNP | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 42904353 | 42905561 | + | evm.model.ptg000008l.926 | HCH8g0609 | 549707 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0609 | 340 | Pfam | WRC | 77 | 119 | IPR014977 | - | |
HCH8g0609 | 340 | ProSiteProfiles | WRC domain profile. | 76 | 120 | IPR014977 | - | |
HCH8g0609 | 340 | ProSiteProfiles | QLQ domain profile. | 8 | 43 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH8g0609 | 340 | PANTHER | GROWTH-REGULATING FACTOR 5 | 2 | 329 | IPR031137 | GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro) | |
HCH8g0609 | 340 | Pfam | QLQ | 8 | 41 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
HCH8g0609 | 340 | SMART | QLQ_2 | 7 | 43 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0387 | HCH-Chr11:3738387 | HCH8g0609 | HCH-Chr8:42904353 | 1.10E-29 | dispersed | |
HCH7g1558 | HCH-Chr7:48041074 | HCH8g0609 | HCH-Chr8:42904353 | 3.60E-16 | dispersed | |
HCH2g0343 | HCH-Chr2:44500098 | HCH8g0609 | HCH-Chr8:42904353 | 2.30E-47 | transposed | |
HCH10g0567 | HCH-Chr10:4552305 | HCH8g0609 | HCH-Chr8:42904353 | 4.70E-105 | wgd | |
HCH6g0073 | HCH-Chr6:898326 | HCH8g0609 | HCH-Chr8:42904353 | 4.10E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34010 | PF08879 | WRC | 6.90E-21 | No_clan | HCH | TF |
Pathway information
