Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0609 ATGAGTGCAAGAAGTATGTTTCCATTCACCTCAGCTCAATGGCAGGAACTTGAACATCAAGCTCTCATTTTCAAATACATGGTTTCAGGGATTCCTATACCTCCTGATCTCCTCTTTAGTGTTAAAAGAAGTAACTTGGACTCTCCTTTCACTTCTAAGCTCTTCCCTCACCATCCTCAAAATGTTGGATGGAACTATTTGCAGATGGGTCTAGGGAGGAAAATAGATCCAGAACCAGGAAGATGCAGAAGAACAGATGGAAAGAAATGGAGATGCTCAAAAGAAGCATATCCTGATTCCAAATACTGTGAGAGGCACATGCATAGAGGGAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACAGCAACAAATAACATAAACCATCTCTCAAACGCACCATTTCCTTCTTCCATTACAAATTCCAACGCCAGTAACTCATCCATTCTCTCTTATAAGCCCTTCCCTTCCCAACATTCATCTTCTTCTCCTATTGGAAATAAAATTTCAACCCATGACACGAATACCCTTTTGCTTCTTGAATCTGGTTCTCACTCTGATAGAAATCAAGACTACAGAAATAGGTATGTTTATGGCCTGAAAGAGGGTGTGGATGAGCATGTTTTTTTCTCACAAGAACCTTCTGAAACTACTGGAAGAGGTGGTTTTTGTGCTTCAACAATGGCTGATTCTTGGCAACTAACTCCATTGACAATGAGCAGTTCCTCTGCACATTCAAAACAGAGGAACTGCTCTGTTTTGCAGAGCAGTGATCAGTCTTGCTATCAGTTCCATCAAAGCCTCATAGATCCTTTGAAGCAACAAAAGGGAGATGAATCACAGAAAACCATCCATCGATTCTTTGATGAATGGCCTCCAAAAGAAAGAGAATCATGGCTTGATTTTGATGATAGATCTTCTAATAATGGCTCAGTTTCCACTACTCGCCTCTCAATATCCATTCCCACTGCTTCTAATGACTTTTCCATTTTCAGATCCAAAAATCCATAA 1023 40.18 MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSVKRSNLDSPFTSKLFPHHPQNVGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTATNNINHLSNAPFPSSITNSNASNSSILSYKPFPSQHSSSSPIGNKISTHDTNTLLLLESGSHSDRNQDYRNRYVYGLKEGVDEHVFFSQEPSETTGRGGFCASTMADSWQLTPLTMSSSSAHSKQRNCSVLQSSDQSCYQFHQSLIDPLKQQKGDESQKTIHRFFDEWPPKERESWLDFDDRSSNNGSVSTTRLSISIPTASNDFSIFRSKNP 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42904353 42905561 + evm.model.ptg000008l.926 HCH8g0609 549707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0609 340 Pfam WRC 77 119 IPR014977 -
HCH8g0609 340 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
HCH8g0609 340 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH8g0609 340 PANTHER GROWTH-REGULATING FACTOR 5 2 329 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
HCH8g0609 340 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH8g0609 340 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0387 HCH-Chr11:3738387 HCH8g0609 HCH-Chr8:42904353 1.10E-29 dispersed
HCH7g1558 HCH-Chr7:48041074 HCH8g0609 HCH-Chr8:42904353 3.60E-16 dispersed
HCH2g0343 HCH-Chr2:44500098 HCH8g0609 HCH-Chr8:42904353 2.30E-47 transposed
HCH10g0567 HCH-Chr10:4552305 HCH8g0609 HCH-Chr8:42904353 4.70E-105 wgd
HCH6g0073 HCH-Chr6:898326 HCH8g0609 HCH-Chr8:42904353 4.10E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34010 PF08879 WRC 6.90E-21 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0609 - - - 0.0