Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0609 ATGAGTGCAAGAAGTATGTTTCCATTCACCTCAGCTCAATGGCAGGAACTTGAACATCAAGCTCTCATTTTCAAATACATGGTTTCAGGGATTCCTATACCTCCTGATCTCCTCTTTAGTGTTAAAAGAAGTAACTTGGACTCTCCTTTCACTTCTAAGCTCTTCCCTCACCATCCTCAAAATGTTGGATGGAACTATTTGCAGATGGGTCTAGGGAGGAAAATAGATCCAGAACCAGGAAGATGCAGAAGAACAGATGGAAAGAAATGGAGATGCTCAAAAGAAGCATATCCTGATTCCAAATACTGTGAGAGGCACATGCATAGAGGGAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACAGCAACAAATAACATAAACCATCTCTCAAACGCACCATTTCCTTCTTCCATTACAAATTCCAACGCCAGTAACTCATCCATTCTCTCTTATAAGCCCTTCCCTTCCCAACATTCATCTTCTTCTCCTATTGGAAATAAAATTTCAACCCATGACACGAATACCCTTTTGCTTCTTGAATCTGGTTCTCACTCTGATAGAAATCAAGACTACAGAAATAGGTATGTTTATGGCCTGAAAGAGGGTGTGGATGAGCATGTTTTTTTCTCACAAGAACCTTCTGAAACTACTGGAAGAGGTGGTTTTTGTGCTTCAACAATGGCTGATTCTTGGCAACTAACTCCATTGACAATGAGCAGTTCCTCTGCACATTCAAAACAGAGGAACTGCTCTGTTTTGCAGAGCAGTGATCAGTCTTGCTATCAGTTCCATCAAAGCCTCATAGATCCTTTGAAGCAACAAAAGGGAGATGAATCACAGAAAACCATCCATCGATTCTTTGATGAATGGCCTCCAAAAGAAAGAGAATCATGGCTTGATTTTGATGATAGATCTTCTAATAATGGCTCAGTTTCCACTACTCGCCTCTCAATATCCATTCCCACTGCTTCTAATGACTTTTCCATTTTCAGATCCAAAAATCCATAA 1023 40.18 MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSVKRSNLDSPFTSKLFPHHPQNVGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTATNNINHLSNAPFPSSITNSNASNSSILSYKPFPSQHSSSSPIGNKISTHDTNTLLLLESGSHSDRNQDYRNRYVYGLKEGVDEHVFFSQEPSETTGRGGFCASTMADSWQLTPLTMSSSSAHSKQRNCSVLQSSDQSCYQFHQSLIDPLKQQKGDESQKTIHRFFDEWPPKERESWLDFDDRSSNNGSVSTTRLSISIPTASNDFSIFRSKNP 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42904353 42905561 + evm.model.ptg000008l.926 HCH8g0609 549707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0609 340 Pfam WRC 77 119 IPR014977 -
HCH8g0609 340 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
HCH8g0609 340 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH8g0609 340 PANTHER GROWTH-REGULATING FACTOR 5 2 329 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
HCH8g0609 340 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH8g0609 340 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0609 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0387 HCH-Chr11:3738387 HCH8g0609 HCH-Chr8:42904353 1.10E-29 dispersed
HCH7g1558 HCH-Chr7:48041074 HCH8g0609 HCH-Chr8:42904353 3.60E-16 dispersed
HCH2g0343 HCH-Chr2:44500098 HCH8g0609 HCH-Chr8:42904353 2.30E-47 transposed
HCH10g0567 HCH-Chr10:4552305 HCH8g0609 HCH-Chr8:42904353 4.70E-105 wgd
HCH6g0073 HCH-Chr6:898326 HCH8g0609 HCH-Chr8:42904353 4.10E-65 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0609 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 9.0e-43 171.4
HCH10g0567 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 9.9e-42 167.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34010 PF08879 WRC 6.90E-21 No_clan HCH TF