Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0615 ATGGGAGATAAGAAAGTATCAAATCAAGTTGTTTTACAAATTTTGGATTCTGAAGGAGTCATTGGTGCAAGTACAGAACTCACCGATTCCAAATACTCTCCTTCGCCGGAAATTTCCAAGTTGAGTCCCAATAAGCCCCCCAAAATCCCGGCCCCGTCGACGGTCCGGCGCCCATCGCTTGCTCGGTCGCCGTTTTCGAAACCGAAATCTAGATTAGTAGAGCCACCTTGTCCTGGTGGTGTGAATTTGGCTGAAGAAAAGGCTCAAGCAAAATCAACATCTGATTCACCATTTTGTACTTCTCCTAAGGTGGACTCTCCAGCTAAAACAGCCACTGCCACTAGTCCTAGAGAAACACTGAAGTCGGCCCCGATAACCCCGAAAACCCCGTTGATCTCGAATGCGAATGAGGAGGAAGATGATGAGGAAGTGTACAAAACTGCAGAACTTAAAGTGAAAGAAAGGTCAAAGAAGAAATTGAAAAAAGTAGTCTTAATTGAGTGGGTTGCATTTTTGTGCATATCAGGGTGTTTAATTGCTAGTTTAACAGTAAACAAGTTGCTGAGTACAGAGATTTGGGGATTGGAACTGTGGAAATGGTGTGTGCTTGTGTTAGCGACGTTCTGCGGTCGTTTGTTTTCGGAATGGTTCATAAATTGTTTGGTTTTCTTGATTGAAAGAAACTTTTTGCTTAAAAGAAAGGTTTTGTATTTTGTGTATGGGCTGAGGAAAAGTGTTATAGTTCTCATTTGGTTGGGTTTGGTTCTTCTAGCATGGGGTTTATTGTTTGACAGAAGCAGCAAACGATCTAAGAAAGCGAATGAGATTCTGAATTACGTTACACGAGCTCTTGCTTCTTTTCTCCTTGGAGCAGGGATTTGGCTGATAAAAACTTTGTTGGTGAAGTTGCTAGCTGCTTCTTTTCAATGCACTCGATTCTTCGACCGGATTCAAGAGTCGATCTTTCATCAGTATGTTCTGCGGACTCTATCAGGGCCTCCGCTGATGGAAATTGCGGAGAGAATTGGGACCAAGGCTATTTCAGGGCACTTGAGTTTCAGGCATTTGAAGAAAGAAAAGGATGGCGGGAACGAAGGGAAGGAAGAAGTGATCGATGTTGATAGGCTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATTAATGTTATAGGGAGTTCAGGGCTGTCTACCATCTCCAATACTATTGAGAATTTTGACGAGGATGGTGAGCAGAAAGATAAGGAGATTAACAGCGAATGGGAAGCGAGGGCTGCAGCTTACCAAATTTTCAGGAATGTTGCCAAGCCTGGTAGCAAGTATATCGATGAAGAAGATCTCTTCCGTTTCATGAAGAAGGAAGAGGTTGATAATGTGCTCCCACTGTTTGAAGGAGCTGTTGAGACTGGAAAGATAAAGCGGAAAACCCTGAAGAACTGGCTGGTGAATGTTTACCTTGAACGGAAATCACTTGCGCACTCGCTGAATGATACCAAGACTGCAATAGAGGAGCTAAACAAGCTTGCTTCAGCTATTGTGCTGATTCTGTTTACCATTTTGTGGTTGCTTTTGATGGGTTTCTTAACCACCCAAGTACTTGTCTTCATTTCATCTCAGCTTTTGCTGGTGGTTTTCATGTTTGGAAATACTGCCAAAACTGTATTTGAAGCCATCATTTTCGTGTTTGTGATGCATCCATTCGATGTGGGGGATCGTTGTGTTGTAGATGGTGTGCAGATGGTTGTTGAAGAGATGAACATTTTGACCACTATCTTCTTGAGATATGACAATGAGAAGATATTCTATCCAAATTCAGTTCTGGCTACCAAACCCATCAGCAACTATTACAGGAGCCCCGAGATGAGTGATTCTGTTGAATTTTCCGTTGATTTCTCCACGTCGATTGAGAGTATCGGAGCTCTAAAAGCAAGAATAAGATCATACTTGGAAAGCAAACCTCAACATTGGCGTGCAGGTCACAGTGTCGTCCTGAAGGAGATCGAGAATGTCGACAAGATGAAATTAGGTCTATACGTTAATCACACCATAAACTTCCAAAACTACGGCGACAAGAGCAGCCGCAGATCCGAACTAGTCTGGGAGCTGAAGAAAATTCTCGAAGAGCTCGACATTAAGTATCATCTGCTGCCGCAAGAAGTTCTTGTCAGCTCTGTGGGTTCAGCATCTGCCCCAATGGTTCCACCCTTGAGGAGATGA 2232 43.19 MGDKKVSNQVVLQILDSEGVIGASTELTDSKYSPSPEISKLSPNKPPKIPAPSTVRRPSLARSPFSKPKSRLVEPPCPGGVNLAEEKAQAKSTSDSPFCTSPKVDSPAKTATATSPRETLKSAPITPKTPLISNANEEEDDEEVYKTAELKVKERSKKKLKKVVLIEWVAFLCISGCLIASLTVNKLLSTEIWGLELWKWCVLVLATFCGRLFSEWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVLIWLGLVLLAWGLLFDRSSKRSKKANEILNYVTRALASFLLGAGIWLIKTLLVKLLAASFQCTRFFDRIQESIFHQYVLRTLSGPPLMEIAERIGTKAISGHLSFRHLKKEKDGGNEGKEEVIDVDRLKKMKQEKISAWTMRGLINVIGSSGLSTISNTIENFDEDGEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMKKEEVDNVLPLFEGAVETGKIKRKTLKNWLVNVYLERKSLAHSLNDTKTAIEELNKLASAIVLILFTILWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMSDSVEFSVDFSTSIESIGALKARIRSYLESKPQHWRAGHSVVLKEIENVDKMKLGLYVNHTINFQNYGDKSSRRSELVWELKKILEELDIKYHLLPQEVLVSSVGSASAPMVPPLRR 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42947174 42949967 - evm.model.ptg000008l.920 HCH8g0615 549713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0615 743 Gene3D - 571 620 IPR023408 -
HCH8g0615 743 MobiDBLite consensus disorder prediction 23 39 - -
HCH8g0615 743 PIRSF Memb_At2g17000 19 742 IPR016688 -
HCH8g0615 743 MobiDBLite consensus disorder prediction 87 132 - -
HCH8g0615 743 FunFam Predicted mechanosensitive ion channel 571 620 - -
HCH8g0615 743 MobiDBLite consensus disorder prediction 19 132 - -
HCH8g0615 743 Pfam Mechanosensitive ion channel, beta-domain 564 621 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH8g0615 743 SUPERFAMILY Sm-like ribonucleoproteins 561 620 IPR010920 -
HCH8g0615 743 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 41 731 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0582 HCH-Chr2:49639800 HCH8g0615 HCH-Chr8:42947174 1.40E-152 dispersed
HCH7g0440 HCH-Chr7:3258243 HCH8g0615 HCH-Chr8:42947174 3.50E-153 dispersed
HCH6g1377 HCH-Chr6:47698743 HCH8g0615 HCH-Chr8:42947174 5.60E-178 transposed
HCH12g0472 HCH-Chr12:2773254 HCH8g0615 HCH-Chr8:42947174 8.20E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0615 K22048 - csv:101209209 1109.36