Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0625 ATGAGGAAGGGAGGATTCAATACCACCCTCAAGCTCAATCTTCCCTCTCAAGAAGACCATTCCATCTCCAATTTTCTAACACAGAGTGGCACGTTTAAAGATGGTGATCTGCTTGTAAACAAAGATGGGGTTCGGATTATTTCTAAGAACGAAGTTGAAGCACCGCCTCCAATTAAGCCTTCGGATGATCAGTTGAGTTTAGCGGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTGGTGCAGCACAAATGGACTGGTCAGTTTTTTGCATTAAAGGTAATTCAAATGAAAATTGAGGAATCTTACCGCAAGCAGATTGCACAAGAACTAAAAATCAACCGAGCAGCTCAGTGTCCCTATGTTGTTGTCTGCTATCAGTCTCTCTATGATAATGGCTCCATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTTAAAAAAATTGAAGAACGACATCTGGCTGCCATCTGTAAGCAGGTGCTGCAGGGATTGTTGTATCTCCACCATGAAAGACACATTATCCACCGGGACATGAAACCTTCTAATTTACTGGTAAATCATAGAGGGGAAGTGAAGATTACTGATTTTGGTGTCAGTGCGATTATGGCAAGCACGTCTGGAGAGGCTAATACTTTTGTTGGCACGTACAACTATATGTCTCCTGAGAGAATTGTTGGAGACAAATATGACAATAAAAGTGACATTTGGAGCTTGGGGCTAATATTACTCGAGTGTGCAACGGGCAAATTTCCTTATTCGCCACCAGGGCAAGATGGAGCATGGGTTAATTTCTATGAGCTTATGGAAGCCATTGTTGATGGCACGCCTCCTTCTGCTCCGTCTGACCAATTTACTCCCAACTTTTGCGAGTTCATTTCTGCATGTGTGCAAAAAGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGCACACCCTTTCATCAAGATGTATGAAGATATGGATATTGATCTGTCATCTTACTTCAACGATGCAGGATCTCCGCTTGCAACTTTCTAA 1065 41.69 MRKGGFNTTLKLNLPSQEDHSISNFLTQSGTFKDGDLLVNKDGVRIISKNEVEAPPPIKPSDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTGQFFALKVIQMKIEESYRKQIAQELKINRAAQCPYVVVCYQSLYDNGSIYIILEYMDGGSLADFLKKVKKIEERHLAAICKQVLQGLLYLHHERHIIHRDMKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGDKYDNKSDIWSLGLILLECATGKFPYSPPGQDGAWVNFYELMEAIVDGTPPSAPSDQFTPNFCEFISACVQKDPKDRLSARELLAHPFIKMYEDMDIDLSSYFNDAGSPLATF 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43046641 43049841 + evm.model.ptg000008l.910 HCH8g0625 549723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0625 354 ProSiteProfiles Protein kinase domain profile. 70 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0625 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0625 354 SMART serkin_6 70 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0625 354 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
HCH8g0625 354 SUPERFAMILY Protein kinase-like (PK-like) 70 337 IPR011009 -
HCH8g0625 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 17 349 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
HCH8g0625 354 CDD PKc_MAPKK_plant_like 68 334 - -
HCH8g0625 354 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0625 354 FunFam Mitogen-activated protein kinase kinase 6 151 349 - -
HCH8g0625 354 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
HCH8g0625 354 Gene3D Transferase(Phosphotransferase) domain 1 150 350 - -
HCH8g0625 354 Gene3D Phosphorylase Kinase; domain 1 46 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0504 HCH-Chr10:4106576 HCH8g0625 HCH-Chr8:43046641 2.30E-122 dispersed
HCH6g0026 HCH-Chr6:435463 HCH8g0625 HCH-Chr8:43046641 1.90E-50 dispersed
HCH8g0625 HCH-Chr8:43046641 HCH9g0122 HCH-Chr9:669002 3.20E-60 dispersed
HCH8g0625 HCH-Chr8:43046641 HCH8g0627 HCH-Chr8:43070543 3.00E-18 proximal
HCH10g0549 HCH-Chr10:4434408 HCH8g0625 HCH-Chr8:43046641 5.80E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81694 PF00069 Pkinase 7.10E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0625 K20603 - csv:101204545 639.032