Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0627 ATGGAGAATCAAAATCAGCATCATGAGGTTGAGGAAGAAGAAAAGAAAGAAAAAGAAGATCAAAAAGTGGTGGGACCCACCGCCGGAGGAGGAGGAGGAGATGAAGAAGAAGAAGGTGGAGCCATAGGTTCAAGCCTGACGATGGAAAGGGTTGCTGCAGCTAAACAATATATAGAAAATCATTACAAGGCTCAAAGAAAGCATATTAAGGAACGTAAGGAAAGGCGTACAGTGCTGGAAAGGAAGTTAGCATCCTTAGATGTATCAGAAGAAGAACAAATCAATCAATTGAAGGATTTGGAACGCAAGGAGACTGAGTACATGCGACTGAAAAGACATAAAATTTGTGTTGAAGATTTCGACCTTTTGACTATTATCGGGCGAGGTGCCTTTGGAGAGGTCAGACTTTGCCAGGAGAAGAAAACAGGCAATATATATGCCATGAAAAAATTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAAAGCTGAAAGGAATTTACTTGCAGAAGTTGCCAGTCACTGCATTGTTAAACTTTATTATTCCTTTCAAGATACTGAATACCTGTATCTTATTATGGAGTATCTTCCGGGAGGTGACATGATGACTCTACTGATAAGAGAAGAAACCTTGACTGAAAGCGTGGCTAGATTTTACATCGCCCAAAGTGTTCTGGCAATAGAATCTATTCATAAACATAACTACATACATAGAGATATAAAACCTGATAACCTTCTGCTGGACAAAAAGGGTCATATGAAGCTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCTCAAATCTGTCTTCTATTAATGAAAATGAAGTCCTTGATGATGATAGCTTGCATGATACAGTGGATGAGGAGGGGTGCTTCCCAGGTACTGGAAGCGGGAGGCGCTGGAAGAGTCCCCTTGAACAACTTCAGCACTGGCAGATTAACAGAAGGAAACTGGCATATTCCACGGTTGGCACTCCAGATTACATAGCTCCAGAAGTGTTGCTGAAAAAAGGATATGGCATGGAATGTGACTGGTGGTCTCTGGGTGCAATAATGTACGAAATGCTTATTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAGCATGCAGAAAGATTGTGCGTTGGAAAAATCACTTGAAATTTCCCGAGGATACAAGATTATCACCCGAAGCAAAAGATCTGATCTGTAGGCTACTTTGTGATGTCGAGCATAGGCTTGGTACTGGAGGAACAGACCAAATCAAGGCTCATAGTTGGTTCAAAGATATTGAGTGGGACAAACTCTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAACGGGGAACTTGATACACAAAATTTTATGCAATTTGATGAGGTGGATCCACCACCAACTAGAAGTGGATCTGGACCAATAAGGAAGATGCTGTTGACTCCCAAGGATCTTAGTTTCGTTGGTTATACATACAAAAATTTCGAAGCTCTTAAAGGGTCGCGCCATTCTTTTGATATGAAAACAAGCACCTCCCCGATGCGGTCTTCTTCTGTCGACTCTTCCCAAAGTGACACTGCAATGAACTATTCTGCCAATTACACAACAGAAGACATGAAAACACCTATACTTGCATCATCAGGGGATGCTTTGTCACAGTGA 1656 41.55 MENQNQHHEVEEEEKKEKEDQKVVGPTAGGGGGDEEEEGGAIGSSLTMERVAAAKQYIENHYKAQRKHIKERKERRTVLERKLASLDVSEEEQINQLKDLERKETEYMRLKRHKICVEDFDLLTIIGRGAFGEVRLCQEKKTGNIYAMKKLKKSEMLSRGQVEHVKAERNLLAEVASHCIVKLYYSFQDTEYLYLIMEYLPGGDMMTLLIREETLTESVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKKGHMKLSDFGLCKPLDCSNLSSINENEVLDDDSLHDTVDEEGCFPGTGSGRRWKSPLEQLQHWQINRRKLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLIGYPPFYSDDPVTACRKIVRWKNHLKFPEDTRLSPEAKDLICRLLCDVEHRLGTGGTDQIKAHSWFKDIEWDKLYEMEAAFKPEVNGELDTQNFMQFDEVDPPPTRSGSGPIRKMLLTPKDLSFVGYTYKNFEALKGSRHSFDMKTSTSPMRSSSVDSSQSDTAMNYSANYTTEDMKTPILASSGDALSQ 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43070543 43079383 - evm.model.ptg000008l.908 HCH8g0627 549725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0627 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0627 551 SMART pkinase_C_6 428 492 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0627 551 FunFam Non-specific serine/threonine protein kinase 204 271 - -
HCH8g0627 551 Coils Coil 1 21 - -
HCH8g0627 551 SMART serkin_6 120 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0627 551 FunFam Non-specific serine/threonine protein kinase 446 456 - -
HCH8g0627 551 Pfam Protein kinase C terminal domain 446 490 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0627 551 SUPERFAMILY Protein kinase-like (PK-like) 103 476 IPR011009 -
HCH8g0627 551 ProSiteProfiles Protein kinase domain profile. 120 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0627 551 Pfam Protein kinase domain 122 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0627 551 Pfam Protein kinase domain 318 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0627 551 Coils Coil 83 103 - -
HCH8g0627 551 MobiDBLite consensus disorder prediction 1 23 - -
HCH8g0627 551 Gene3D Phosphorylase Kinase; domain 1 83 203 - -
HCH8g0627 551 Gene3D Transferase(Phosphotransferase) domain 1 204 271 - -
HCH8g0627 551 Gene3D Transferase(Phosphotransferase) domain 1 325 447 - -
HCH8g0627 551 MobiDBLite consensus disorder prediction 504 523 - -
HCH8g0627 551 MobiDBLite consensus disorder prediction 1 46 - -
HCH8g0627 551 FunFam Non-specific serine/threonine protein kinase 326 445 - -
HCH8g0627 551 CDD MobB_NDR_LATS-like 54 115 - -
HCH8g0627 551 FunFam Non-specific serine/threonine protein kinase 81 203 - -
HCH8g0627 551 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524(InterPro)
HCH8g0627 551 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 495 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
HCH8g0627 551 CDD STKc_NDR_like 118 491 - -
HCH8g0627 551 ProSiteProfiles AGC-kinase C-terminal domain profile. 428 500 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1494 HCH-Chr6:48512087 HCH8g0627 HCH-Chr8:43070543 1.50E-184 dispersed
HCH8g0627 HCH-Chr8:43070543 HCH8g1345 HCH-Chr8:48336948 7.70E-53 dispersed
HCH8g0625 HCH-Chr8:43046641 HCH8g0627 HCH-Chr8:43070543 3.00E-18 proximal
HCH3g0004 HCH-Chr3:57801 HCH8g0627 HCH-Chr8:43070543 3.20E-70 transposed
HCH12g0486 HCH-Chr12:2843049 HCH8g0627 HCH-Chr8:43070543 2.50E-223 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81695 PF00069 Pkinase 1.10E-42 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0627 K08790 - csv:101208238 896.345