Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0627 | ATGGAGAATCAAAATCAGCATCATGAGGTTGAGGAAGAAGAAAAGAAAGAAAAAGAAGATCAAAAAGTGGTGGGACCCACCGCCGGAGGAGGAGGAGGAGATGAAGAAGAAGAAGGTGGAGCCATAGGTTCAAGCCTGACGATGGAAAGGGTTGCTGCAGCTAAACAATATATAGAAAATCATTACAAGGCTCAAAGAAAGCATATTAAGGAACGTAAGGAAAGGCGTACAGTGCTGGAAAGGAAGTTAGCATCCTTAGATGTATCAGAAGAAGAACAAATCAATCAATTGAAGGATTTGGAACGCAAGGAGACTGAGTACATGCGACTGAAAAGACATAAAATTTGTGTTGAAGATTTCGACCTTTTGACTATTATCGGGCGAGGTGCCTTTGGAGAGGTCAGACTTTGCCAGGAGAAGAAAACAGGCAATATATATGCCATGAAAAAATTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAAAGCTGAAAGGAATTTACTTGCAGAAGTTGCCAGTCACTGCATTGTTAAACTTTATTATTCCTTTCAAGATACTGAATACCTGTATCTTATTATGGAGTATCTTCCGGGAGGTGACATGATGACTCTACTGATAAGAGAAGAAACCTTGACTGAAAGCGTGGCTAGATTTTACATCGCCCAAAGTGTTCTGGCAATAGAATCTATTCATAAACATAACTACATACATAGAGATATAAAACCTGATAACCTTCTGCTGGACAAAAAGGGTCATATGAAGCTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCTCAAATCTGTCTTCTATTAATGAAAATGAAGTCCTTGATGATGATAGCTTGCATGATACAGTGGATGAGGAGGGGTGCTTCCCAGGTACTGGAAGCGGGAGGCGCTGGAAGAGTCCCCTTGAACAACTTCAGCACTGGCAGATTAACAGAAGGAAACTGGCATATTCCACGGTTGGCACTCCAGATTACATAGCTCCAGAAGTGTTGCTGAAAAAAGGATATGGCATGGAATGTGACTGGTGGTCTCTGGGTGCAATAATGTACGAAATGCTTATTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAGCATGCAGAAAGATTGTGCGTTGGAAAAATCACTTGAAATTTCCCGAGGATACAAGATTATCACCCGAAGCAAAAGATCTGATCTGTAGGCTACTTTGTGATGTCGAGCATAGGCTTGGTACTGGAGGAACAGACCAAATCAAGGCTCATAGTTGGTTCAAAGATATTGAGTGGGACAAACTCTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAACGGGGAACTTGATACACAAAATTTTATGCAATTTGATGAGGTGGATCCACCACCAACTAGAAGTGGATCTGGACCAATAAGGAAGATGCTGTTGACTCCCAAGGATCTTAGTTTCGTTGGTTATACATACAAAAATTTCGAAGCTCTTAAAGGGTCGCGCCATTCTTTTGATATGAAAACAAGCACCTCCCCGATGCGGTCTTCTTCTGTCGACTCTTCCCAAAGTGACACTGCAATGAACTATTCTGCCAATTACACAACAGAAGACATGAAAACACCTATACTTGCATCATCAGGGGATGCTTTGTCACAGTGA | 1656 | 41.55 | MENQNQHHEVEEEEKKEKEDQKVVGPTAGGGGGDEEEEGGAIGSSLTMERVAAAKQYIENHYKAQRKHIKERKERRTVLERKLASLDVSEEEQINQLKDLERKETEYMRLKRHKICVEDFDLLTIIGRGAFGEVRLCQEKKTGNIYAMKKLKKSEMLSRGQVEHVKAERNLLAEVASHCIVKLYYSFQDTEYLYLIMEYLPGGDMMTLLIREETLTESVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKKGHMKLSDFGLCKPLDCSNLSSINENEVLDDDSLHDTVDEEGCFPGTGSGRRWKSPLEQLQHWQINRRKLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLIGYPPFYSDDPVTACRKIVRWKNHLKFPEDTRLSPEAKDLICRLLCDVEHRLGTGGTDQIKAHSWFKDIEWDKLYEMEAAFKPEVNGELDTQNFMQFDEVDPPPTRSGSGPIRKMLLTPKDLSFVGYTYKNFEALKGSRHSFDMKTSTSPMRSSSVDSSQSDTAMNYSANYTTEDMKTPILASSGDALSQ | 551 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 43070543 | 43079383 | - | evm.model.ptg000008l.908 | HCH8g0627 | 549725 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0627 | 551 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 239 | 251 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g0627 | 551 | SMART | pkinase_C_6 | 428 | 492 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g0627 | 551 | FunFam | Non-specific serine/threonine protein kinase | 204 | 271 | - | - | |
HCH8g0627 | 551 | Coils | Coil | 1 | 21 | - | - | |
HCH8g0627 | 551 | SMART | serkin_6 | 120 | 427 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g0627 | 551 | FunFam | Non-specific serine/threonine protein kinase | 446 | 456 | - | - | |
HCH8g0627 | 551 | Pfam | Protein kinase C terminal domain | 446 | 490 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g0627 | 551 | SUPERFAMILY | Protein kinase-like (PK-like) | 103 | 476 | IPR011009 | - | |
HCH8g0627 | 551 | ProSiteProfiles | Protein kinase domain profile. | 120 | 427 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g0627 | 551 | Pfam | Protein kinase domain | 122 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g0627 | 551 | Pfam | Protein kinase domain | 318 | 427 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g0627 | 551 | Coils | Coil | 83 | 103 | - | - | |
HCH8g0627 | 551 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
HCH8g0627 | 551 | Gene3D | Phosphorylase Kinase; domain 1 | 83 | 203 | - | - | |
HCH8g0627 | 551 | Gene3D | Transferase(Phosphotransferase) domain 1 | 204 | 271 | - | - | |
HCH8g0627 | 551 | Gene3D | Transferase(Phosphotransferase) domain 1 | 325 | 447 | - | - | |
HCH8g0627 | 551 | MobiDBLite | consensus disorder prediction | 504 | 523 | - | - | |
HCH8g0627 | 551 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
HCH8g0627 | 551 | FunFam | Non-specific serine/threonine protein kinase | 326 | 445 | - | - | |
HCH8g0627 | 551 | CDD | MobB_NDR_LATS-like | 54 | 115 | - | - | |
HCH8g0627 | 551 | FunFam | Non-specific serine/threonine protein kinase | 81 | 203 | - | - | |
HCH8g0627 | 551 | ProSitePatterns | Protein kinases ATP-binding region signature. | 126 | 149 | IPR017441 | GO:0005524(InterPro) | |
HCH8g0627 | 551 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 18 | 495 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
HCH8g0627 | 551 | CDD | STKc_NDR_like | 118 | 491 | - | - | |
HCH8g0627 | 551 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 428 | 500 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH6g1494 | HCH-Chr6:48512087 | HCH8g0627 | HCH-Chr8:43070543 | 1.50E-184 | dispersed | |
HCH8g0627 | HCH-Chr8:43070543 | HCH8g1345 | HCH-Chr8:48336948 | 7.70E-53 | dispersed | |
HCH8g0625 | HCH-Chr8:43046641 | HCH8g0627 | HCH-Chr8:43070543 | 3.00E-18 | proximal | |
HCH3g0004 | HCH-Chr3:57801 | HCH8g0627 | HCH-Chr8:43070543 | 3.20E-70 | transposed | |
HCH12g0486 | HCH-Chr12:2843049 | HCH8g0627 | HCH-Chr8:43070543 | 2.50E-223 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81695 | PF00069 | Pkinase | 1.10E-42 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g0627 | K08790 | - | csv:101208238 | 896.345 |