Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0646 ATGGAGGTGGTGATTCCACTGATTCTTCAGCTGGTGATTTTGAGTGTTACTGCTTCTGAAATTCAAGGAATTGGTGGGGTCAGTATTTCTCCATCTTCTGCAACTTCTTCAGCATTTCCTCCAGTTGAAGTAACACCTGGTCCAGTCCATCATGGGAAGACATTGATAAGCAGTGGACCGAGCTTAGAACCGCAACAAAATGATTCGATTTCACGACCTCCTCTCGTGTCACCGCCAATTACACCGATTCCATTGCCTCATACAATTGAAGGGTTTGTACCATCCTCATCACCTAGTTCTCCAACGGAATTGCCACCCTTACCAATTCAACCAAATGTATCATCGGTTCCACCAAGTGCACCAGAAATAGAAGGTGCAGCACCAGTTAGTGAGACTCCTCTTTCAATGATTTCTCCAGCTCCAGCCGTAACAACTTGGGATTCTCCGCATTTTTCACCATCAAGTCCCCCACATCCGCAAAAGAACTTTTCACCAGGTTCTCATCAAAGAACTTCTTCACCAGATGTAGCTCCCACCCCTGAGGCAATATCTCCAGCTAGCAAGTTGCCTAAGAACTCACCAGCCATTCCCCCGGTAATGCCTGAAAGATCTTCACCCCCCTTACCAGAGCCTGATATCTCTCCAACAATAGCTATTTCCCCTCAAGCTGGTAGCAGAAAGAGGTTTGAATCACCGGTAGCTGCACCTTATAACGTAATACCCAAGCACATGCCATCCGTGAATAAGTCCCCAAAAGAAGCTCCTCCCACTCACAATACCTTGAGACACTCTCATGATGCTGACAAGCCAATTCTTTCACCACAAAAAGCTCCATTTTATAGAGTAGACCTTTCTCCTACATCTCCTCCTAAGCCATTATATAACTATAAGCATCATGGAAAGAGGAATCATATCATCAATCATGCACCACAACCATCATATCCAATTTCCTCTCACACAAAAAAACACCAAGGTCCAGTTGTTTCTCCAACACAACATAGAAGGAGTAGAGGACACGATACTCCACCTATTGAATCAGAACCCTCTTCAGTCTCTCCTTCCCATCATTATTTCCCTCCAGAAGTGAGTCACGTTTCACCTATTCCTTCACCATCTCCGGAACCTGTGTCTGAGCAAACTCAAAGACATATTCACCCCCCTAAAGCTTCTCCATTTGAACCTTCGACTAGAAAGCCAAAGATGGCACCCCCACAAGTCCATGGGCTGCCTCCTCCACCTCCCAATGAAGACTGTTCAACAACTCTTTGCACAGAGCCATACACAAATACTCCCCCAGGATCTCCCTGTGGTTGTGTTTGGCCCATGCAAATTGGGCTTCGCCTCAACGTTCCGCTGTATACTTTCTTCCCTTTGGTTTCGGAGTTGGCTGAGGAAATTGCAACAGGAGTGTTTATAAAACTGAGTCAAGTTCGCATTATTGGAGCCAACGCAGCTAACCAACAACCAGATAAGACTGTTGTCCTTGTTGACTTGGTACCTCTTGGCGAAAAATTTGACAACACTACAGCCTTCTTAACTTACCAAAGATTTTGGCACAAAAAGGTTTCCATCAGAGCTTCCTACTTTGGAGACTATGAAGTACTGTATGTTCGCTATCCAGGTTTACCTGCATCCCCTCCTGGAGACTCTCTTATAGATAATGAGCCTTATTCCAGTAACAGTAACAATGCCAGGACAATAAAACCTATTGGGGTTGACGTACATAATAGACAGCATAAAGATAGGATTAGTGGTGGTATGATTGCTATCATTACCCTGTCAACTATTGTTGCAGTGGTCTTGTGCATAGCTACTGCCTGGATTCTGCTCTTCAGACGAAATGATGATGTTCGTGAGCTAAAATCAACTCCACGGGTTTCTATGCCTTCCCTCACTAAACCATCAGGTGTTGGTGGTTCAATTATGGCAAGTATGCCTAGTTCAATTTCTTTATCTTTTGGGTCTAGTATGGCTCCATATTCAGGGTCTGCCAAGATGTTCAATGCCACTGACTTAGAGAAGGCCACTAATAATTTTGATCCTTCAAGAGTACTGGGGGAAGGTGGCTTTGGACGTGTTTACGGTGGTATTCTTGAGGATGGTACTGAAGTAGCAGTCAAAGTTCTCAAGAGAGATAATCATCAGGGTGATCGTGAATTCTTGGCTGAGGTTGAAATGCTTAGCCGCCTCCACCACAGAAATTTGGTCAAATTGATTGGAATATGTACTGAGGAACACAGCCGCTGCCTGGTTTATGAACTGATTCCAAATGGCAGTGTGGATTCTCACTTGCATGGTGTTGATAGGGAAAATGCCCCACTTGACTGGGGTGCCCGGATGAAGATAGCACTTGGTGCTGCTCGGGGTCTATCCTATCTGCATGAGGATTCAAGTCCTAGAGTCATACATCGAGACTTCAAATCCAGTAACATTTTGCTAGAACATGATTTTACACCAAAAGTTTCTGATTTTGGTTTGGCTCGGACTGCACTGGATGAGGAAAGCAGACACATATCAACACGTGTCATGGGAACTTTCGGGTATGTGGCTCCGGAGTATGCAATGACCGGTCATCTTCTTGTAAAGAGTGATGTTTATAGCTATGGGGTCGTTCTTCTTGAGCTTTTAACGGCCAGAAAACCAGTAGATATGTCACAACCACCTGGTGAAGAAAACCTTGTCGCTTGGGCTCGTCCACTCCTCACAAGCAAAGAAGGCTTGGAAGCTATAGTTGACAAATCACTAGCATCTGATGTTCCTTTTGACAGTATTGCCAAAGTGGCAGCCATTGCTTCAATGTGTGTGCAACCGGAGGTGTCACATCGACCTTTTATGGGTGAAGTCGTTCAAGCCTTGAAACTAGTTTGTAATCAGTGTGATGAGGCCAACGAATCAAGTTCAAGGGGTTTGAGCCAAGAGGATGTGTCAGTGGATATGAATGACGAGGCATCGAGTTCAAGACTCGTGCTGGATTCTTTTCATAGCCAATATGCATTACCCGACTACGATTCAGGTCCTGACATTACTGATACACGTCTCTCACTTTCAGAATTGTTACATATATCTGTTGGAATCGGTACACGAGAACCCGGATTACTCGGAAGACAATTCAATTCTGGTCCCCTAAGAATGGGGAGAGGCAGACAGTTTTGGCAGAGAATGAGAAGGTACTCTGAAAGTAGTGCAAGTGAGCATGGAATGCCCAGGTCATGGTCAGTTCTACGTCTACCCAATAGATTAGGAAGCTCTTCCACATAG 3258 44.9 MEVVIPLILQLVILSVTASEIQGIGGVSISPSSATSSAFPPVEVTPGPVHHGKTLISSGPSLEPQQNDSISRPPLVSPPITPIPLPHTIEGFVPSSSPSSPTELPPLPIQPNVSSVPPSAPEIEGAAPVSETPLSMISPAPAVTTWDSPHFSPSSPPHPQKNFSPGSHQRTSSPDVAPTPEAISPASKLPKNSPAIPPVMPERSSPPLPEPDISPTIAISPQAGSRKRFESPVAAPYNVIPKHMPSVNKSPKEAPPTHNTLRHSHDADKPILSPQKAPFYRVDLSPTSPPKPLYNYKHHGKRNHIINHAPQPSYPISSHTKKHQGPVVSPTQHRRSRGHDTPPIESEPSSVSPSHHYFPPEVSHVSPIPSPSPEPVSEQTQRHIHPPKASPFEPSTRKPKMAPPQVHGLPPPPPNEDCSTTLCTEPYTNTPPGSPCGCVWPMQIGLRLNVPLYTFFPLVSELAEEIATGVFIKLSQVRIIGANAANQQPDKTVVLVDLVPLGEKFDNTTAFLTYQRFWHKKVSIRASYFGDYEVLYVRYPGLPASPPGDSLIDNEPYSSNSNNARTIKPIGVDVHNRQHKDRISGGMIAIITLSTIVAVVLCIATAWILLFRRNDDVRELKSTPRVSMPSLTKPSGVGGSIMASMPSSISLSFGSSMAPYSGSAKMFNATDLEKATNNFDPSRVLGEGGFGRVYGGILEDGTEVAVKVLKRDNHQGDREFLAEVEMLSRLHHRNLVKLIGICTEEHSRCLVYELIPNGSVDSHLHGVDRENAPLDWGARMKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTALDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTARKPVDMSQPPGEENLVAWARPLLTSKEGLEAIVDKSLASDVPFDSIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCDEANESSSRGLSQEDVSVDMNDEASSSRLVLDSFHSQYALPDYDSGPDITDTRLSLSELLHISVGIGTREPGLLGRQFNSGPLRMGRGRQFWQRMRRYSESSASEHGMPRSWSVLRLPNRLGSSST 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43267767 43274222 + evm.model.ptg000008l.889 HCH8g0646 549744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0646 1085 MobiDBLite consensus disorder prediction 256 270 - -
HCH8g0646 1085 MobiDBLite consensus disorder prediction 35 127 - -
HCH8g0646 1085 MobiDBLite consensus disorder prediction 140 275 - -
HCH8g0646 1085 Gene3D Phosphorylase Kinase; domain 1 654 754 - -
HCH8g0646 1085 ProSitePatterns Protein kinases ATP-binding region signature. 685 707 IPR017441 GO:0005524(InterPro)
HCH8g0646 1085 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0646 1085 PANTHER OS01G0750732 PROTEIN 415 999 IPR050885 -
HCH8g0646 1085 MobiDBLite consensus disorder prediction 99 115 - -
HCH8g0646 1085 Gene3D Transferase(Phosphotransferase) domain 1 755 979 - -
HCH8g0646 1085 FunFam receptor-like serine/threonine-protein kinase ALE2 652 754 - -
HCH8g0646 1085 SUPERFAMILY Protein kinase-like (PK-like) 658 952 IPR011009 -
HCH8g0646 1085 MobiDBLite consensus disorder prediction 58 74 - -
HCH8g0646 1085 CDD STKc_IRAK 685 953 - -
HCH8g0646 1085 MobiDBLite consensus disorder prediction 161 178 - -
HCH8g0646 1085 Pfam Protein tyrosine and serine/threonine kinase 683 952 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0646 1085 MobiDBLite consensus disorder prediction 310 331 - -
HCH8g0646 1085 MobiDBLite consensus disorder prediction 191 214 - -
HCH8g0646 1085 ProSiteProfiles Protein kinase domain profile. 679 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0646 1085 FunFam Receptor-like serine/threonine-protein kinase ALE2 755 972 - -
HCH8g0646 1085 MobiDBLite consensus disorder prediction 305 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0442 HCH-Chr6:12270439 HCH8g0646 HCH-Chr8:43267767 3.10E-110 dispersed
HCH8g0133 HCH-Chr8:5392505 HCH8g0646 HCH-Chr8:43267767 3.60E-82 dispersed
HCH8g0646 HCH-Chr8:43267767 HCH8g0750 HCH-Chr8:44129632 1.50E-79 dispersed
HCH5g0141 HCH-Chr5:841047 HCH8g0646 HCH-Chr8:43267767 6.80E-180 transposed
HCH4g1481 HCH-Chr4:11199573 HCH8g0646 HCH-Chr8:43267767 2.00E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81696 PF07714 PK_Tyr_Ser-Thr 6.90E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0646 - - - 0.0