Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0646 | ATGGAGGTGGTGATTCCACTGATTCTTCAGCTGGTGATTTTGAGTGTTACTGCTTCTGAAATTCAAGGAATTGGTGGGGTCAGTATTTCTCCATCTTCTGCAACTTCTTCAGCATTTCCTCCAGTTGAAGTAACACCTGGTCCAGTCCATCATGGGAAGACATTGATAAGCAGTGGACCGAGCTTAGAACCGCAACAAAATGATTCGATTTCACGACCTCCTCTCGTGTCACCGCCAATTACACCGATTCCATTGCCTCATACAATTGAAGGGTTTGTACCATCCTCATCACCTAGTTCTCCAACGGAATTGCCACCCTTACCAATTCAACCAAATGTATCATCGGTTCCACCAAGTGCACCAGAAATAGAAGGTGCAGCACCAGTTAGTGAGACTCCTCTTTCAATGATTTCTCCAGCTCCAGCCGTAACAACTTGGGATTCTCCGCATTTTTCACCATCAAGTCCCCCACATCCGCAAAAGAACTTTTCACCAGGTTCTCATCAAAGAACTTCTTCACCAGATGTAGCTCCCACCCCTGAGGCAATATCTCCAGCTAGCAAGTTGCCTAAGAACTCACCAGCCATTCCCCCGGTAATGCCTGAAAGATCTTCACCCCCCTTACCAGAGCCTGATATCTCTCCAACAATAGCTATTTCCCCTCAAGCTGGTAGCAGAAAGAGGTTTGAATCACCGGTAGCTGCACCTTATAACGTAATACCCAAGCACATGCCATCCGTGAATAAGTCCCCAAAAGAAGCTCCTCCCACTCACAATACCTTGAGACACTCTCATGATGCTGACAAGCCAATTCTTTCACCACAAAAAGCTCCATTTTATAGAGTAGACCTTTCTCCTACATCTCCTCCTAAGCCATTATATAACTATAAGCATCATGGAAAGAGGAATCATATCATCAATCATGCACCACAACCATCATATCCAATTTCCTCTCACACAAAAAAACACCAAGGTCCAGTTGTTTCTCCAACACAACATAGAAGGAGTAGAGGACACGATACTCCACCTATTGAATCAGAACCCTCTTCAGTCTCTCCTTCCCATCATTATTTCCCTCCAGAAGTGAGTCACGTTTCACCTATTCCTTCACCATCTCCGGAACCTGTGTCTGAGCAAACTCAAAGACATATTCACCCCCCTAAAGCTTCTCCATTTGAACCTTCGACTAGAAAGCCAAAGATGGCACCCCCACAAGTCCATGGGCTGCCTCCTCCACCTCCCAATGAAGACTGTTCAACAACTCTTTGCACAGAGCCATACACAAATACTCCCCCAGGATCTCCCTGTGGTTGTGTTTGGCCCATGCAAATTGGGCTTCGCCTCAACGTTCCGCTGTATACTTTCTTCCCTTTGGTTTCGGAGTTGGCTGAGGAAATTGCAACAGGAGTGTTTATAAAACTGAGTCAAGTTCGCATTATTGGAGCCAACGCAGCTAACCAACAACCAGATAAGACTGTTGTCCTTGTTGACTTGGTACCTCTTGGCGAAAAATTTGACAACACTACAGCCTTCTTAACTTACCAAAGATTTTGGCACAAAAAGGTTTCCATCAGAGCTTCCTACTTTGGAGACTATGAAGTACTGTATGTTCGCTATCCAGGTTTACCTGCATCCCCTCCTGGAGACTCTCTTATAGATAATGAGCCTTATTCCAGTAACAGTAACAATGCCAGGACAATAAAACCTATTGGGGTTGACGTACATAATAGACAGCATAAAGATAGGATTAGTGGTGGTATGATTGCTATCATTACCCTGTCAACTATTGTTGCAGTGGTCTTGTGCATAGCTACTGCCTGGATTCTGCTCTTCAGACGAAATGATGATGTTCGTGAGCTAAAATCAACTCCACGGGTTTCTATGCCTTCCCTCACTAAACCATCAGGTGTTGGTGGTTCAATTATGGCAAGTATGCCTAGTTCAATTTCTTTATCTTTTGGGTCTAGTATGGCTCCATATTCAGGGTCTGCCAAGATGTTCAATGCCACTGACTTAGAGAAGGCCACTAATAATTTTGATCCTTCAAGAGTACTGGGGGAAGGTGGCTTTGGACGTGTTTACGGTGGTATTCTTGAGGATGGTACTGAAGTAGCAGTCAAAGTTCTCAAGAGAGATAATCATCAGGGTGATCGTGAATTCTTGGCTGAGGTTGAAATGCTTAGCCGCCTCCACCACAGAAATTTGGTCAAATTGATTGGAATATGTACTGAGGAACACAGCCGCTGCCTGGTTTATGAACTGATTCCAAATGGCAGTGTGGATTCTCACTTGCATGGTGTTGATAGGGAAAATGCCCCACTTGACTGGGGTGCCCGGATGAAGATAGCACTTGGTGCTGCTCGGGGTCTATCCTATCTGCATGAGGATTCAAGTCCTAGAGTCATACATCGAGACTTCAAATCCAGTAACATTTTGCTAGAACATGATTTTACACCAAAAGTTTCTGATTTTGGTTTGGCTCGGACTGCACTGGATGAGGAAAGCAGACACATATCAACACGTGTCATGGGAACTTTCGGGTATGTGGCTCCGGAGTATGCAATGACCGGTCATCTTCTTGTAAAGAGTGATGTTTATAGCTATGGGGTCGTTCTTCTTGAGCTTTTAACGGCCAGAAAACCAGTAGATATGTCACAACCACCTGGTGAAGAAAACCTTGTCGCTTGGGCTCGTCCACTCCTCACAAGCAAAGAAGGCTTGGAAGCTATAGTTGACAAATCACTAGCATCTGATGTTCCTTTTGACAGTATTGCCAAAGTGGCAGCCATTGCTTCAATGTGTGTGCAACCGGAGGTGTCACATCGACCTTTTATGGGTGAAGTCGTTCAAGCCTTGAAACTAGTTTGTAATCAGTGTGATGAGGCCAACGAATCAAGTTCAAGGGGTTTGAGCCAAGAGGATGTGTCAGTGGATATGAATGACGAGGCATCGAGTTCAAGACTCGTGCTGGATTCTTTTCATAGCCAATATGCATTACCCGACTACGATTCAGGTCCTGACATTACTGATACACGTCTCTCACTTTCAGAATTGTTACATATATCTGTTGGAATCGGTACACGAGAACCCGGATTACTCGGAAGACAATTCAATTCTGGTCCCCTAAGAATGGGGAGAGGCAGACAGTTTTGGCAGAGAATGAGAAGGTACTCTGAAAGTAGTGCAAGTGAGCATGGAATGCCCAGGTCATGGTCAGTTCTACGTCTACCCAATAGATTAGGAAGCTCTTCCACATAG | 3258 | 44.9 | MEVVIPLILQLVILSVTASEIQGIGGVSISPSSATSSAFPPVEVTPGPVHHGKTLISSGPSLEPQQNDSISRPPLVSPPITPIPLPHTIEGFVPSSSPSSPTELPPLPIQPNVSSVPPSAPEIEGAAPVSETPLSMISPAPAVTTWDSPHFSPSSPPHPQKNFSPGSHQRTSSPDVAPTPEAISPASKLPKNSPAIPPVMPERSSPPLPEPDISPTIAISPQAGSRKRFESPVAAPYNVIPKHMPSVNKSPKEAPPTHNTLRHSHDADKPILSPQKAPFYRVDLSPTSPPKPLYNYKHHGKRNHIINHAPQPSYPISSHTKKHQGPVVSPTQHRRSRGHDTPPIESEPSSVSPSHHYFPPEVSHVSPIPSPSPEPVSEQTQRHIHPPKASPFEPSTRKPKMAPPQVHGLPPPPPNEDCSTTLCTEPYTNTPPGSPCGCVWPMQIGLRLNVPLYTFFPLVSELAEEIATGVFIKLSQVRIIGANAANQQPDKTVVLVDLVPLGEKFDNTTAFLTYQRFWHKKVSIRASYFGDYEVLYVRYPGLPASPPGDSLIDNEPYSSNSNNARTIKPIGVDVHNRQHKDRISGGMIAIITLSTIVAVVLCIATAWILLFRRNDDVRELKSTPRVSMPSLTKPSGVGGSIMASMPSSISLSFGSSMAPYSGSAKMFNATDLEKATNNFDPSRVLGEGGFGRVYGGILEDGTEVAVKVLKRDNHQGDREFLAEVEMLSRLHHRNLVKLIGICTEEHSRCLVYELIPNGSVDSHLHGVDRENAPLDWGARMKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTALDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTARKPVDMSQPPGEENLVAWARPLLTSKEGLEAIVDKSLASDVPFDSIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCDEANESSSRGLSQEDVSVDMNDEASSSRLVLDSFHSQYALPDYDSGPDITDTRLSLSELLHISVGIGTREPGLLGRQFNSGPLRMGRGRQFWQRMRRYSESSASEHGMPRSWSVLRLPNRLGSSST | 1085 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 43267767 | 43274222 | + | evm.model.ptg000008l.889 | HCH8g0646 | 549744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0646 | 1085 | MobiDBLite | consensus disorder prediction | 256 | 270 | - | - | |
HCH8g0646 | 1085 | MobiDBLite | consensus disorder prediction | 35 | 127 | - | - | |
HCH8g0646 | 1085 | MobiDBLite | consensus disorder prediction | 140 | 275 | - | - | |
HCH8g0646 | 1085 | Gene3D | Phosphorylase Kinase; domain 1 | 654 | 754 | - | - | |
HCH8g0646 | 1085 | ProSitePatterns | Protein kinases ATP-binding region signature. | 685 | 707 | IPR017441 | GO:0005524(InterPro) | |
HCH8g0646 | 1085 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 801 | 813 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g0646 | 1085 | PANTHER | OS01G0750732 PROTEIN | 415 | 999 | IPR050885 | - | |
HCH8g0646 | 1085 | MobiDBLite | consensus disorder prediction | 99 | 115 | - | - | |
HCH8g0646 | 1085 | Gene3D | Transferase(Phosphotransferase) domain 1 | 755 | 979 | - | - | |
HCH8g0646 | 1085 | FunFam | receptor-like serine/threonine-protein kinase ALE2 | 652 | 754 | - | - | |
HCH8g0646 | 1085 | SUPERFAMILY | Protein kinase-like (PK-like) | 658 | 952 | IPR011009 | - | |
HCH8g0646 | 1085 | MobiDBLite | consensus disorder prediction | 58 | 74 | - | - | |
HCH8g0646 | 1085 | CDD | STKc_IRAK | 685 | 953 | - | - | |
HCH8g0646 | 1085 | MobiDBLite | consensus disorder prediction | 161 | 178 | - | - | |
HCH8g0646 | 1085 | Pfam | Protein tyrosine and serine/threonine kinase | 683 | 952 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g0646 | 1085 | MobiDBLite | consensus disorder prediction | 310 | 331 | - | - | |
HCH8g0646 | 1085 | MobiDBLite | consensus disorder prediction | 191 | 214 | - | - | |
HCH8g0646 | 1085 | ProSiteProfiles | Protein kinase domain profile. | 679 | 955 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g0646 | 1085 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 755 | 972 | - | - | |
HCH8g0646 | 1085 | MobiDBLite | consensus disorder prediction | 305 | 417 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH6g0442 | HCH-Chr6:12270439 | HCH8g0646 | HCH-Chr8:43267767 | 3.10E-110 | dispersed | |
HCH8g0133 | HCH-Chr8:5392505 | HCH8g0646 | HCH-Chr8:43267767 | 3.60E-82 | dispersed | |
HCH8g0646 | HCH-Chr8:43267767 | HCH8g0750 | HCH-Chr8:44129632 | 1.50E-79 | dispersed | |
HCH5g0141 | HCH-Chr5:841047 | HCH8g0646 | HCH-Chr8:43267767 | 6.80E-180 | transposed | |
HCH4g1481 | HCH-Chr4:11199573 | HCH8g0646 | HCH-Chr8:43267767 | 2.00E-228 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81696 | PF07714 | PK_Tyr_Ser-Thr | 6.90E-49 | CL0016 | HCH | PK |
Pathway information
