Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0682 | ATGATGCTTGGCGAACCGCGCCGCCTTGGACCGGCGGTTCATATATCGCCGTTAACGATAACGGAAGACCAGACGTTGGATACGCAGTTTCCGTTTCCTCTGAGTGGAATCTCTGTGAGCTCTGACGGTGATGGAAGCGGTAGCGATTATTCACCGTATTATCTTCAAGAAGCATTAGCGGCGTTGCAGCGGTATCTTCCTACGAATGACCCGGAATTTGAGTCCGATTCGGAGCTGTCGGGTCGGGAATCGGATGCTCCGATAGACGCTTATTCGTGTGATCATTTCCGTATATTTGAATTTAAAGTGAGGAAGTGTACACGTGGCAGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAAGCTCGCCGGAGAGACCCGAGGAAGTTTCATTATTCCGGCACGGCGTGTCCGGAGTTCAGGAAAGGAAGTTGTAAGAAAGGCGATTCCTGCGAGTACGCTCATGGAGTGTTTGAATGTTGGCTTCATCCGGCCCGCTATCGGACTCAGCCGTGTAAAGACGGCACTAATTGTCGAAGGAGGGTTTGTTTCTTCGCTCATACGCCGGAGCAGCTTAGGGTTTTGCCTCAGCAGAGCCCCAGGAGTGTCAATTCGCCTGATTGTTTCGACGAATTGACGAAACCAATGACTTTCATGTCTTCTCCTGTGTCAATTTCGCCTTCTGCTACCCCGGTTGAGTCTCCGCCTTTGTCGCCGATGACTCGGTCCCTTGGCCGGTCTCTCGGCTCTAATTCCATCAATGAAATGGTTGCTTCTCTTCGCAATTTGCATCTGAACAAAGTGAAGTCTTTACCCACTTCGTGGAATGTTCAAGTCGGCTCTCCCGGTTCGTGTTCGGGTTCAGGTTATGCATCTCGGGCTCGACCGGGGTTTTGTAGCCTACCGACAACACCGACCCGGGCTCCGAGCGGACGTGGAATTGGGATGGTGGATTTTGTGGATTATGGATTGGAGGAGGAACCGGTGATGGAGCGAGTGGAATCAGGGAGACAGCTGAGGGCTAAGATGTTGGAGAAGCTAAGCAAGGAGAATTCGGTCGGTGGTGGGGCGGATTCGGGTTCGTCGGTAGGGAATGTTCCTGATGTTGGGTGGGTATCCGAGCTTGTGAAGTAG | 1146 | 52.53 | MMLGEPRRLGPAVHISPLTITEDQTLDTQFPFPLSGISVSSDGDGSGSDYSPYYLQEALAALQRYLPTNDPEFESDSELSGRESDAPIDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGSCKKGDSCEYAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSVNSPDCFDELTKPMTFMSSPVSISPSATPVESPPLSPMTRSLGRSLGSNSINEMVASLRNLHLNKVKSLPTSWNVQVGSPGSCSGSGYASRARPGFCSLPTTPTRAPSGRGIGMVDFVDYGLEEEPVMERVESGRQLRAKMLEKLSKENSVGGGADSGSSVGNVPDVGWVSELVK | 381 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 43524013 | 43525158 | - | evm.model.ptg000008l.853 | HCH8g0682 | 549780 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0682 | 381 | FunFam | Zinc finger CCCH domain-containing protein 66 | 93 | 161 | - | - | |
| HCH8g0682 | 381 | Gene3D | - | 135 | 199 | - | - | |
| HCH8g0682 | 381 | SMART | c3hfinal6 | 170 | 193 | IPR000571 | GO:0046872(InterPro) | |
| HCH8g0682 | 381 | SMART | c3hfinal6 | 135 | 161 | IPR000571 | GO:0046872(InterPro) | |
| HCH8g0682 | 381 | PANTHER | UNKEMPT FAMILY MEMBER | 51 | 381 | IPR045234 | - | |
| HCH8g0682 | 381 | MobiDBLite | consensus disorder prediction | 226 | 245 | - | - | |
| HCH8g0682 | 381 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 139 | 160 | IPR000571 | GO:0046872(InterPro) | |
| HCH8g0682 | 381 | ProSiteProfiles | Zinc finger C3H1-type profile. | 136 | 162 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0523 | HCH-Chr12:3042949 | HCH8g0682 | HCH-Chr8:43524013 | 1.70E-81 | dispersed | |
| HCH1g0362 | HCH-Chr1:50648123 | HCH8g0682 | HCH-Chr8:43524013 | 1.30E-46 | dispersed | |
| HCH2g1018 | HCH-Chr2:53400203 | HCH8g0682 | HCH-Chr8:43524013 | 3.20E-51 | dispersed | |
| HCH6g0358 | HCH-Chr6:5775836 | HCH8g0682 | HCH-Chr8:43524013 | 3.30E-51 | dispersed | |
| HCH11g1035 | HCH-Chr11:41892392 | HCH8g0682 | HCH-Chr8:43524013 | 2.30E-46 | transposed | |
| HCH7g0132 | HCH-Chr7:893918 | HCH8g0682 | HCH-Chr8:43524013 | 4.30E-60 | transposed | |
| HCH10g0519 | HCH-Chr10:4214361 | HCH8g0682 | HCH-Chr8:43524013 | 4.10E-114 | wgd | |
| HCH4g0558 | HCH-Chr4:3609386 | HCH8g0682 | HCH-Chr8:43524013 | 8.90E-58 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34018 | PF00642 | zf-CCCH | 1.20E-05 | CL0537 | HCH | TF |
Pathway information