Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0695 | ATGTCAAAACTTCAACTCCTTTTTAGCATCATTCTTCTTCTTCTCTTGCTCCATCCTTCGCCAACAAATTGCCACACTAAAGGGATCAAACCGAGGAATTCAGGAACGAGTATTCTGCCAAAGAATGCAACCAAAACCCAATTCTCAGAACAGCAATTCATGAAATGGGTCAAGTTTGTTGGAAGCCTTAAACACTCTATTTTCAAGACAGCTAAGAACAAGCTCTTCCCTTCTTTCACTCTCCATGTCGCCAAGAACCCCGCCGCCGGCGACTTTACGTCAATTCAAGACGCAGTGGATTCTCTTCCGTTCATCAACTTGGTGAGAGTTGTCATCAAAGTTCATGCAGGTGTATACACGGAAAAAGTGATCATTCCACCGTTTAAATCATTCATAACAATAGAAGGAGAAGGAGCAGACAAAACAGTAGTTCAATGGGGAGATACAGCACAAACACCAGGGCCGAGGGGGCAGCCATTGGGGACCTTCAATTCAGCTACATTTGCAGTGAATTCTCCTTATTTCATAGCCAAGAACATCACCTTCAAGAACACAACACCAGTGCCAGCACCAGGAGCAATAGGAAAACAAGCAGTGGCGTTTAGAATATCAGCAGACACAGGCACCTTCATAGGATGCAGATTCTTGGGTGCTCAAGACACACTCTATGATCATTTGGGTCGTCACTATTACAAAGATTGTTACATTGAGGGGTCTGTGGATTTCATATTTGGGAACGGTCTGTCCCTATTTGAGGGATGTCACGTGCATGCGATAGCACAGTATACAGGAGCGTTAACGGCGCAGGGAAGGAGCAGTCTATTGGAAGACACAGGGTTCTCATTTGTAAACTGTAAAGTCACGGGGTCTGGAGCACTATACCTTGGTAGAGCTTGGGGCCCTTTCTCTCGTGTTGTGTTTGCTTATACTTATATGGACAACATCATCATGCCTAAAGGCTGGTATAATTGGGGCGATCCTAACCGTGAAATGACAGTGTTTTATGGGCAATACAAATGCACGGGATCAGGATCAAGTTTTGCTGGCAGAGTTTCATGGTCAAGAGAGCTCACTGATGAAGAAGCTAAGCCTTTTATTTCCCTTACCTTCATTGATGGCTCTGAATGGATCAAAATCTAA | 1140 | 44.3 | MSKLQLLFSIILLLLLLHPSPTNCHTKGIKPRNSGTSILPKNATKTQFSEQQFMKWVKFVGSLKHSIFKTAKNKLFPSFTLHVAKNPAAGDFTSIQDAVDSLPFINLVRVVIKVHAGVYTEKVIIPPFKSFITIEGEGADKTVVQWGDTAQTPGPRGQPLGTFNSATFAVNSPYFIAKNITFKNTTPVPAPGAIGKQAVAFRISADTGTFIGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIMPKGWYNWGDPNREMTVFYGQYKCTGSGSSFAGRVSWSRELTDEEAKPFISLTFIDGSEWIKI | 379 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 43665010 | 43667535 | + | evm.model.ptg000008l.840 | HCH8g0695 | 549793 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0695 | 379 | ProSitePatterns | Pectinesterase signature 2. | 236 | 245 | IPR033131 | - | |
| HCH8g0695 | 379 | Pfam | Pectinesterase | 83 | 373 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| HCH8g0695 | 379 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 27 | 378 | - | GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER) | |
| HCH8g0695 | 379 | FunFam | Pectinesterase | 77 | 379 | - | - | |
| HCH8g0695 | 379 | Gene3D | - | 78 | 379 | IPR012334 | - | |
| HCH8g0695 | 379 | SUPERFAMILY | Pectin lyase-like | 77 | 378 | IPR011050 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0709 | HCH-Chr13:5872638 | HCH8g0695 | HCH-Chr8:43665010 | 1.70E-73 | dispersed | |
| HCH13g1370 | HCH-Chr13:41598257 | HCH8g0695 | HCH-Chr8:43665010 | 1.70E-131 | dispersed | |
| HCH2g0453 | HCH-Chr2:47990851 | HCH8g0695 | HCH-Chr8:43665010 | 1.70E-68 | dispersed | |
| HCH4g0734 | HCH-Chr4:4730663 | HCH8g0695 | HCH-Chr8:43665010 | 7.10E-78 | dispersed | |
| HCH5g0374 | HCH-Chr5:2431254 | HCH8g0695 | HCH-Chr8:43665010 | 3.40E-83 | dispersed | |
| HCH6g1323 | HCH-Chr6:47351196 | HCH8g0695 | HCH-Chr8:43665010 | 4.80E-81 | dispersed | |
| HCH7g1024 | HCH-Chr7:41808019 | HCH8g0695 | HCH-Chr8:43665010 | 4.00E-63 | dispersed | |
| HCH8g0081 | HCH-Chr8:3954616 | HCH8g0695 | HCH-Chr8:43665010 | 2.80E-47 | dispersed | |
| HCH8g0573 | HCH-Chr8:42550238 | HCH8g0695 | HCH-Chr8:43665010 | 6.90E-69 | dispersed | |
| HCH8g0574 | HCH-Chr8:42558672 | HCH8g0695 | HCH-Chr8:43665010 | 7.30E-74 | dispersed | |
| HCH8g0695 | HCH-Chr8:43665010 | HCH4g1103 | HCH-Chr4:7208766 | 1.50E-84 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH8g0695 | K01051 | - | csv:101215894 | 694.886 |