Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0695 ATGTCAAAACTTCAACTCCTTTTTAGCATCATTCTTCTTCTTCTCTTGCTCCATCCTTCGCCAACAAATTGCCACACTAAAGGGATCAAACCGAGGAATTCAGGAACGAGTATTCTGCCAAAGAATGCAACCAAAACCCAATTCTCAGAACAGCAATTCATGAAATGGGTCAAGTTTGTTGGAAGCCTTAAACACTCTATTTTCAAGACAGCTAAGAACAAGCTCTTCCCTTCTTTCACTCTCCATGTCGCCAAGAACCCCGCCGCCGGCGACTTTACGTCAATTCAAGACGCAGTGGATTCTCTTCCGTTCATCAACTTGGTGAGAGTTGTCATCAAAGTTCATGCAGGTGTATACACGGAAAAAGTGATCATTCCACCGTTTAAATCATTCATAACAATAGAAGGAGAAGGAGCAGACAAAACAGTAGTTCAATGGGGAGATACAGCACAAACACCAGGGCCGAGGGGGCAGCCATTGGGGACCTTCAATTCAGCTACATTTGCAGTGAATTCTCCTTATTTCATAGCCAAGAACATCACCTTCAAGAACACAACACCAGTGCCAGCACCAGGAGCAATAGGAAAACAAGCAGTGGCGTTTAGAATATCAGCAGACACAGGCACCTTCATAGGATGCAGATTCTTGGGTGCTCAAGACACACTCTATGATCATTTGGGTCGTCACTATTACAAAGATTGTTACATTGAGGGGTCTGTGGATTTCATATTTGGGAACGGTCTGTCCCTATTTGAGGGATGTCACGTGCATGCGATAGCACAGTATACAGGAGCGTTAACGGCGCAGGGAAGGAGCAGTCTATTGGAAGACACAGGGTTCTCATTTGTAAACTGTAAAGTCACGGGGTCTGGAGCACTATACCTTGGTAGAGCTTGGGGCCCTTTCTCTCGTGTTGTGTTTGCTTATACTTATATGGACAACATCATCATGCCTAAAGGCTGGTATAATTGGGGCGATCCTAACCGTGAAATGACAGTGTTTTATGGGCAATACAAATGCACGGGATCAGGATCAAGTTTTGCTGGCAGAGTTTCATGGTCAAGAGAGCTCACTGATGAAGAAGCTAAGCCTTTTATTTCCCTTACCTTCATTGATGGCTCTGAATGGATCAAAATCTAA 1140 44.3 MSKLQLLFSIILLLLLLHPSPTNCHTKGIKPRNSGTSILPKNATKTQFSEQQFMKWVKFVGSLKHSIFKTAKNKLFPSFTLHVAKNPAAGDFTSIQDAVDSLPFINLVRVVIKVHAGVYTEKVIIPPFKSFITIEGEGADKTVVQWGDTAQTPGPRGQPLGTFNSATFAVNSPYFIAKNITFKNTTPVPAPGAIGKQAVAFRISADTGTFIGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIMPKGWYNWGDPNREMTVFYGQYKCTGSGSSFAGRVSWSRELTDEEAKPFISLTFIDGSEWIKI 379
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 43665010 43667535 + evm.model.ptg000008l.840 HCH8g0695 549793
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0695 379 ProSitePatterns Pectinesterase signature 2. 236 245 IPR033131 -
HCH8g0695 379 Pfam Pectinesterase 83 373 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH8g0695 379 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 27 378 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
HCH8g0695 379 FunFam Pectinesterase 77 379 - -
HCH8g0695 379 Gene3D - 78 379 IPR012334 -
HCH8g0695 379 SUPERFAMILY Pectin lyase-like 77 378 IPR011050 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0709 HCH-Chr13:5872638 HCH8g0695 HCH-Chr8:43665010 1.70E-73 dispersed
HCH13g1370 HCH-Chr13:41598257 HCH8g0695 HCH-Chr8:43665010 1.70E-131 dispersed
HCH2g0453 HCH-Chr2:47990851 HCH8g0695 HCH-Chr8:43665010 1.70E-68 dispersed
HCH4g0734 HCH-Chr4:4730663 HCH8g0695 HCH-Chr8:43665010 7.10E-78 dispersed
HCH5g0374 HCH-Chr5:2431254 HCH8g0695 HCH-Chr8:43665010 3.40E-83 dispersed
HCH6g1323 HCH-Chr6:47351196 HCH8g0695 HCH-Chr8:43665010 4.80E-81 dispersed
HCH7g1024 HCH-Chr7:41808019 HCH8g0695 HCH-Chr8:43665010 4.00E-63 dispersed
HCH8g0081 HCH-Chr8:3954616 HCH8g0695 HCH-Chr8:43665010 2.80E-47 dispersed
HCH8g0573 HCH-Chr8:42550238 HCH8g0695 HCH-Chr8:43665010 6.90E-69 dispersed
HCH8g0574 HCH-Chr8:42558672 HCH8g0695 HCH-Chr8:43665010 7.30E-74 dispersed
HCH8g0695 HCH-Chr8:43665010 HCH4g1103 HCH-Chr4:7208766 1.50E-84 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0695 K01051 - csv:101215894 694.886