Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0696 | ATGGGAAGAGCAACGAGGTGGTTCAAAAACTTGTTTGGAATTAAAAAAGAAAAACAAAAGAATCCCATTTCCAATTCCAATTCCAATTCCAACCAGGAAAAGAAACCGGCCAACCTCGGAGAATCCAAACTATGCAACAACCCAACAACAATCCCACCAAATTTATCCGCCGCCGAAGCCGCTTGGCTCAAATCATTCTACTCCGAAACCGACAAAGAGCAAAACAAACACGCAATAGCGGTGGCTGCCGCCACCGCCGCAGCCGCAGATGCTGCAGTCGCCGCTGCACAGGCCGCCGTGGCAGTGGTTAGACTGACCAGCCACGGCAGAGGTACTATGTTTGGCGGTGGCAGGGAAAGATGGGCTTCTGTAAAAATTCAAACTTTTTTTAGAGGCTATTTGGCAAGGAAAGCTCTGAGGGCATTGAAAGGATTGGTGAAGATTCAAGCACTTGTTAGAGGATATTTAGTGAGAAAACAAGCAACGGCAACTCTTTATAGTATGCAAGCTTTGATTAGAGCTCAAGCCACCGTTAGATCTCAGAGGAATCGTAAACTCGTTACTCTAAAAGACGAAACCATAAATAACAACAGATTTGAAATCCGAGCCAGAAAATCCACAGAGAAATTTGATGACACTAAAAGTGAACAAACAATTTTTTCAGTACACAGTAGAAGACTCTCTGCTTCTTTGGACACAACATTAAACCTTAACTCCCTCGAAGAAAGTCCCAAGATAGTGGAAATAGATACCGGCAGACCCAAATCGTGGTCTCGCCGGACGACGACGAACACATCGGTGTCGGAATCCGGCGACGACCCTTTTAACCAAACGTTATCCTCTCCACTCCCATGTCGGACTCCGTCGCGTTTACAGATCCCTGACTGCCGGAACTTTCAAGATTCCGACTGGGGTCTCACCGGGGAAGAATGCCGGTTCTCTACTGCTCAGAGTACTCCACGGTTTGTCAACTCCGGCCGTCCGATTACGCCGGCGAAGAGTTTGTGTGGTGATAATAACTTTTTCAGAGGGTATATGAATTTTCCTAATTACATGGCGAATACTCAATCGTTTAAGGCGAAATTGAGGTCTTACAGCGCGCCGAAACAGCGGCCGGAGCCGGGGTCGAAGAAGAGGCTTTCGTTGAATGAATTGATGGAGTCAAGGAGTAGTTTAAGTGGGGTTAAAATGCAGAGGTCTTGTTCACATGTTCAAGAAGCCATTAATTTCAAGAATGCTGTTATGAGTAAATTGGATAGGTCGTCGGAATTCAATCGGGAGGCTGACCGGAGTTTATTGCAGAGAAGATTATGA | 1314 | 46.12 | MGRATRWFKNLFGIKKEKQKNPISNSNSNSNQEKKPANLGESKLCNNPTTIPPNLSAAEAAWLKSFYSETDKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKQATATLYSMQALIRAQATVRSQRNRKLVTLKDETINNNRFEIRARKSTEKFDDTKSEQTIFSVHSRRLSASLDTTLNLNSLEESPKIVEIDTGRPKSWSRRTTTNTSVSESGDDPFNQTLSSPLPCRTPSRLQIPDCRNFQDSDWGLTGEECRFSTAQSTPRFVNSGRPITPAKSLCGDNNFFRGYMNFPNYMANTQSFKAKLRSYSAPKQRPEPGSKKRLSLNELMESRSSLSGVKMQRSCSHVQEAINFKNAVMSKLDRSSEFNREADRSLLQRRL | 437 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 43669908 | 43671393 | - | evm.model.ptg000008l.839 | HCH8g0696 | 549794 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0696 | 437 | SMART | iq_5 | 118 | 140 | IPR000048 | GO:0005515(InterPro) | |
| HCH8g0696 | 437 | SMART | iq_5 | 141 | 162 | IPR000048 | GO:0005515(InterPro) | |
| HCH8g0696 | 437 | MobiDBLite | consensus disorder prediction | 19 | 50 | - | - | |
| HCH8g0696 | 437 | Gene3D | - | 121 | 161 | - | - | |
| HCH8g0696 | 437 | PANTHER | IQ-DOMAIN 5-RELATED | 6 | 384 | - | - | |
| HCH8g0696 | 437 | MobiDBLite | consensus disorder prediction | 256 | 282 | - | - | |
| HCH8g0696 | 437 | Pfam | Protein of unknown function (DUF4005) | 330 | 395 | IPR025064 | - | |
| HCH8g0696 | 437 | ProSiteProfiles | IQ motif profile. | 119 | 147 | - | - | |
| HCH8g0696 | 437 | ProSiteProfiles | IQ motif profile. | 143 | 170 | - | - | |
| HCH8g0696 | 437 | Pfam | IQ calmodulin-binding motif | 120 | 140 | IPR000048 | GO:0005515(InterPro) | |
| HCH8g0696 | 437 | Pfam | IQ calmodulin-binding motif | 146 | 160 | IPR000048 | GO:0005515(InterPro) | |
| HCH8g0696 | 437 | MobiDBLite | consensus disorder prediction | 18 | 50 | - | - | |
| HCH8g0696 | 437 | MobiDBLite | consensus disorder prediction | 251 | 282 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH5g1306 | HCH-Chr5:49328618 | HCH8g0696 | HCH-Chr8:43669908 | 3.20E-93 | dispersed | |
| HCH6g1565 | HCH-Chr6:48962845 | HCH8g0696 | HCH-Chr8:43669908 | 4.70E-19 | dispersed | |
| HCH7g1248 | HCH-Chr7:45340650 | HCH8g0696 | HCH-Chr8:43669908 | 2.30E-18 | dispersed | |
| HCH8g0696 | HCH-Chr8:43669908 | HCH9g0605 | HCH-Chr9:4048401 | 3.20E-09 | dispersed | |
| HCH4g1441 | HCH-Chr4:10632509 | HCH8g0696 | HCH-Chr8:43669908 | 5.70E-98 | wgd | |
| HCH6g0147 | HCH-Chr6:1943850 | HCH8g0696 | HCH-Chr8:43669908 | 2.60E-44 | wgd |
Pathway information