Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0696 ATGGGAAGAGCAACGAGGTGGTTCAAAAACTTGTTTGGAATTAAAAAAGAAAAACAAAAGAATCCCATTTCCAATTCCAATTCCAATTCCAACCAGGAAAAGAAACCGGCCAACCTCGGAGAATCCAAACTATGCAACAACCCAACAACAATCCCACCAAATTTATCCGCCGCCGAAGCCGCTTGGCTCAAATCATTCTACTCCGAAACCGACAAAGAGCAAAACAAACACGCAATAGCGGTGGCTGCCGCCACCGCCGCAGCCGCAGATGCTGCAGTCGCCGCTGCACAGGCCGCCGTGGCAGTGGTTAGACTGACCAGCCACGGCAGAGGTACTATGTTTGGCGGTGGCAGGGAAAGATGGGCTTCTGTAAAAATTCAAACTTTTTTTAGAGGCTATTTGGCAAGGAAAGCTCTGAGGGCATTGAAAGGATTGGTGAAGATTCAAGCACTTGTTAGAGGATATTTAGTGAGAAAACAAGCAACGGCAACTCTTTATAGTATGCAAGCTTTGATTAGAGCTCAAGCCACCGTTAGATCTCAGAGGAATCGTAAACTCGTTACTCTAAAAGACGAAACCATAAATAACAACAGATTTGAAATCCGAGCCAGAAAATCCACAGAGAAATTTGATGACACTAAAAGTGAACAAACAATTTTTTCAGTACACAGTAGAAGACTCTCTGCTTCTTTGGACACAACATTAAACCTTAACTCCCTCGAAGAAAGTCCCAAGATAGTGGAAATAGATACCGGCAGACCCAAATCGTGGTCTCGCCGGACGACGACGAACACATCGGTGTCGGAATCCGGCGACGACCCTTTTAACCAAACGTTATCCTCTCCACTCCCATGTCGGACTCCGTCGCGTTTACAGATCCCTGACTGCCGGAACTTTCAAGATTCCGACTGGGGTCTCACCGGGGAAGAATGCCGGTTCTCTACTGCTCAGAGTACTCCACGGTTTGTCAACTCCGGCCGTCCGATTACGCCGGCGAAGAGTTTGTGTGGTGATAATAACTTTTTCAGAGGGTATATGAATTTTCCTAATTACATGGCGAATACTCAATCGTTTAAGGCGAAATTGAGGTCTTACAGCGCGCCGAAACAGCGGCCGGAGCCGGGGTCGAAGAAGAGGCTTTCGTTGAATGAATTGATGGAGTCAAGGAGTAGTTTAAGTGGGGTTAAAATGCAGAGGTCTTGTTCACATGTTCAAGAAGCCATTAATTTCAAGAATGCTGTTATGAGTAAATTGGATAGGTCGTCGGAATTCAATCGGGAGGCTGACCGGAGTTTATTGCAGAGAAGATTATGA 1314 46.12 MGRATRWFKNLFGIKKEKQKNPISNSNSNSNQEKKPANLGESKLCNNPTTIPPNLSAAEAAWLKSFYSETDKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKQATATLYSMQALIRAQATVRSQRNRKLVTLKDETINNNRFEIRARKSTEKFDDTKSEQTIFSVHSRRLSASLDTTLNLNSLEESPKIVEIDTGRPKSWSRRTTTNTSVSESGDDPFNQTLSSPLPCRTPSRLQIPDCRNFQDSDWGLTGEECRFSTAQSTPRFVNSGRPITPAKSLCGDNNFFRGYMNFPNYMANTQSFKAKLRSYSAPKQRPEPGSKKRLSLNELMESRSSLSGVKMQRSCSHVQEAINFKNAVMSKLDRSSEFNREADRSLLQRRL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43669908 43671393 - evm.model.ptg000008l.839 HCH8g0696 549794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0696 437 SMART iq_5 118 140 IPR000048 GO:0005515(InterPro)
HCH8g0696 437 SMART iq_5 141 162 IPR000048 GO:0005515(InterPro)
HCH8g0696 437 MobiDBLite consensus disorder prediction 19 50 - -
HCH8g0696 437 Gene3D - 121 161 - -
HCH8g0696 437 PANTHER IQ-DOMAIN 5-RELATED 6 384 - -
HCH8g0696 437 MobiDBLite consensus disorder prediction 256 282 - -
HCH8g0696 437 Pfam Protein of unknown function (DUF4005) 330 395 IPR025064 -
HCH8g0696 437 ProSiteProfiles IQ motif profile. 119 147 - -
HCH8g0696 437 ProSiteProfiles IQ motif profile. 143 170 - -
HCH8g0696 437 Pfam IQ calmodulin-binding motif 120 140 IPR000048 GO:0005515(InterPro)
HCH8g0696 437 Pfam IQ calmodulin-binding motif 146 160 IPR000048 GO:0005515(InterPro)
HCH8g0696 437 MobiDBLite consensus disorder prediction 18 50 - -
HCH8g0696 437 MobiDBLite consensus disorder prediction 251 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0696 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1306 HCH-Chr5:49328618 HCH8g0696 HCH-Chr8:43669908 3.20E-93 dispersed
HCH6g1565 HCH-Chr6:48962845 HCH8g0696 HCH-Chr8:43669908 4.70E-19 dispersed
HCH7g1248 HCH-Chr7:45340650 HCH8g0696 HCH-Chr8:43669908 2.30E-18 dispersed
HCH8g0696 HCH-Chr8:43669908 HCH9g0605 HCH-Chr9:4048401 3.20E-09 dispersed
HCH4g1441 HCH-Chr4:10632509 HCH8g0696 HCH-Chr8:43669908 5.70E-98 wgd
HCH6g0147 HCH-Chr6:1943850 HCH8g0696 HCH-Chr8:43669908 2.60E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37