Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0700 ATGAAGAAAACTTTCCCTTCCTCTTGTTATCTTCTTCTTCTTCTCTTCCTCGTCCATTCAATCAATTCCCAACAACTTTATGAACAAAATCACAACATCCTTCTCCAACTAAACGTAAGCGGAGATTTCCCAGAAAATTCCGGAACCATAAACAGATCTAATCAGAGAATCCTGAGCAGTTTGTTTACTATACTAAACTTGAGCTGCATAATATTATTCACGTTCTCTCTCTTTGTAATCATAATTTACAAGAAGAGGAGTAACAGAATAGATCGCCAATGGAAGCTCACTGCATTCCAGAGCCTGAATTTCTCCGAAATGGATCTGTTATCGGGACTTACAAAAGAAAACGTGATCGGAAAAGGCGGATTCGGGAAAGTTTACAAGATAGTAATGAATTCCAGCGAAACCGTGGCGGTGAGAAAAATACGGAGCGACAGAAAGAAGGAGAAACATGTCATGGATGAAGTCAATAATCTGGGTTTGATTCGTCATAAGAACATAGTCAAACTGCTAGGTTGTTGTTCCTACGAAACGACATCCAAGTTTCTCGTCTACGAGAACATGCAAAATCATCAAACCCTCGAGGAATTGTTACATAACAACAAAAACAGCAGAATTCCAGGGTCGGATTGTGTTAATATTGACTGGCCGAAAAGATATCAAATTGCGGTCGGGGCAGCGAGAGGCCTCTGCTACATGCACCATGAATGCTCGCCGCCAGTGATTCATAGTGATTTGAAGTCTAGCAATATCTTGCTCGATTCAGAATTCAATCCCAAGATAGCTGATCTTGATTTAGCTAAATTGTTGCCAAAGAAAAGAGCATTTGAAATGGTATCAGATTTGGCTGGTTCTTATGGATATATGGCTCCAGAATATGGTTATACAGCAAGATTGAATGATAAAATAGATGTGTTTAGTTTTGGGGTTATACTTTTGGAGCTGGTAACTGGAAGAGAAGCTATGGATGGAAAAACAACTCTTGTGGAGTGGGGTTGGAATCATATTCAAGAAGGAAAACCAATAACGGATGCTTTGGATGAGAAGATAAAGAAGGATTGTTATTTGGATGAAATGTCAAGTGTTTTTAAGCTTGGGCTTATTTGCACGGCTACTTTGCCTTCCACTAGGCCAACTATGAACCAGGCTTTGCAAATCTTAATCGCTGCCGGAGCTCGCTGGCCGATGATCATGATCATAAAAAGGGCCGGGGGTGGTGTGGAACTCCATTGCTCCATAATTCGAAACGTCGAAGAAACTTAG 1266 40.52 MKKTFPSSCYLLLLLFLVHSINSQQLYEQNHNILLQLNVSGDFPENSGTINRSNQRILSSLFTILNLSCIILFTFSLFVIIIYKKRSNRIDRQWKLTAFQSLNFSEMDLLSGLTKENVIGKGGFGKVYKIVMNSSETVAVRKIRSDRKKEKHVMDEVNNLGLIRHKNIVKLLGCCSYETTSKFLVYENMQNHQTLEELLHNNKNSRIPGSDCVNIDWPKRYQIAVGAARGLCYMHHECSPPVIHSDLKSSNILLDSEFNPKIADLDLAKLLPKKRAFEMVSDLAGSYGYMAPEYGYTARLNDKIDVFSFGVILLELVTGREAMDGKTTLVEWGWNHIQEGKPITDALDEKIKKDCYLDEMSSVFKLGLICTATLPSTRPTMNQALQILIAAGARWPMIMIIKRAGGGVELHCSIIRNVEET 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43733049 43734404 - evm.model.ptg000008l.835 HCH8g0700 549798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0700 421 FunFam Leucine-rich repeat receptor-like protein kinase 189 396 - -
HCH8g0700 421 ProSiteProfiles Protein kinase domain profile. 113 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0700 421 Gene3D Transferase(Phosphotransferase) domain 1 189 394 - -
HCH8g0700 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0700 421 Gene3D Phosphorylase Kinase; domain 1 83 187 - -
HCH8g0700 421 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 29 388 IPR050647 -
HCH8g0700 421 SMART serkin_6 113 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0700 421 CDD STKc_IRAK 119 388 - -
HCH8g0700 421 Pfam Protein kinase domain 114 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0700 421 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524(InterPro)
HCH8g0700 421 SUPERFAMILY Protein kinase-like (PK-like) 105 389 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0700 HCH-Chr8:43733049 HCH3g0284 HCH-Chr3:1800580 4.50E-53 dispersed
HCH8g0699 HCH-Chr8:43721223 HCH8g0700 HCH-Chr8:43733049 3.00E-111 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81700 PF00069 Pkinase 4.10E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0700 - - - 0.0