Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0715 ATGGCTGAAATAATCAACTCTTCTTCTCCTTCTCCTTCTTCATCGGGTTCGTCTGGATACACGACGGACCCGAACTCGAACTCATTGCTAAAACGGCCCGCACAATCCGACCCGAATCCAAAACAAACGAAACGGGCACGTGAGAACAACAACAATAACAACAGCAAACACCCGGTTTACCGTGGGGTTCGAATGAGAACATGGGGCAAATGGGTATCGGAAATCCGTGAACCGAGAAAGAAAAACCGGATCTGGCTCGGCACTTTCGCAACTCCAGAAATGGCGGCGCGTGCACACGACGTAGCAGCTTTAAGCATTAAAGGAAACTCAGCAATTCTTAACTTCCCCGAACTAGCTGACCTACTCCCCCGGCCAGCTTCCAACTCGCCTAGAGATGTTCAAGCCGCTGCCTCCAAAGCCGCCGCTATGGAAATTCAAATCCCAACTCCCCCATCATCATCACCATCATCATCGTCATCGCCATCGATATCGTCATCGTCATCGTCTTTATGCCCTTCGACACCAGAAGAGCTAAGTGAAATAGTGGAGCTTCCAAGTTTAGGAACAAGTTATGAGACAGCAGAAATGGGGAACGAGTTCGTATTTGTTGACTCAGTGGAAGGATGGTTATATTCTTACCCATGGTATCACAGAGTGAATGAAGAAGAAGAAGAAAACTATGGTTTTTTTACGGACCAGACATTAATGATGGAGACAGAGAGTATCATTCCCACAACAGCCTTTGAAGCTTTCTTGTGGCAACATTAA 768 47.01 MAEIINSSSPSPSSSGSSGYTTDPNSNSLLKRPAQSDPNPKQTKRARENNNNNNSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALSIKGNSAILNFPELADLLPRPASNSPRDVQAAASKAAAMEIQIPTPPSSSPSSSSSPSISSSSSSLCPSTPEELSEIVELPSLGTSYETAEMGNEFVFVDSVEGWLYSYPWYHRVNEEEEENYGFFTDQTLMMETESIIPTTAFEAFLWQH 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43891189 43891956 - evm.model.ptg000008l.820 HCH8g0715 549813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0715 255 MobiDBLite consensus disorder prediction 147 175 - -
HCH8g0715 255 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677(InterPro)
HCH8g0715 255 MobiDBLite consensus disorder prediction 1 58 - -
HCH8g0715 255 FunFam Ethylene-responsive transcription factor 2 58 117 - -
HCH8g0715 255 CDD AP2 60 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0715 255 SMART rav1_2 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0715 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 204 IPR051032 -
HCH8g0715 255 Pfam AP2 domain 58 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0715 255 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0715 255 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0715 255 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0715 255 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0715 255 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0749 HCH-Chr12:4783656 HCH8g0715 HCH-Chr8:43891189 9.60E-47 dispersed
HCH4g0333 HCH-Chr4:2187450 HCH8g0715 HCH-Chr8:43891189 1.70E-51 dispersed
HCH5g0357 HCH-Chr5:2341989 HCH8g0715 HCH-Chr8:43891189 1.40E-31 dispersed
HCH6g1032 HCH-Chr6:45048249 HCH8g0715 HCH-Chr8:43891189 2.50E-36 dispersed
HCH7g1760 HCH-Chr7:49243560 HCH8g0715 HCH-Chr8:43891189 1.90E-29 dispersed
HCH8g0581 HCH-Chr8:42657470 HCH8g0715 HCH-Chr8:43891189 2.20E-16 dispersed
HCH8g0715 HCH-Chr8:43891189 HCH9g0513 HCH-Chr9:3295237 9.80E-27 dispersed
HCH10g0484 HCH-Chr10:3943801 HCH8g0715 HCH-Chr8:43891189 3.20E-62 wgd
HCH4g1420 HCH-Chr4:10429685 HCH8g0715 HCH-Chr8:43891189 1.30E-38 wgd
HCH6g0162 HCH-Chr6:2174343 HCH8g0715 HCH-Chr8:43891189 2.50E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34021 PF00847 AP2 6.70E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0715 K09286 - csv:101219745 300.827