Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0724 ATGGGTTGTGTTTACTCAAGGGTTTGTATTGGTGAGGCTACTACTCCAAGAACTGCCACCCGAAATGTGAAAACTGATGGTGAAATCCATACGATTTCTTCGTCGTCTTCGGATAGCCAAGAATGTGAAGTTGTGGACCATTTGAATTCAAACAGAGATTCAGAGGTGGGAATCACTAGGCTCTCTCGAGTTTCATCGCAGTTCTTGCCTGCTGATGGATCTCGAATTGTTAAAGTTCCTTCAGGGAATTTTGAATTGCGGTTTTCGTTTCTCTCACAAAGAGGGTATTACCCTGATGCTCTTGATAAGGCGAATCAAGATAGTTTTTGCATCCACACTCCATTTGGTACCAGCCCAGATGACCACTTCTTTGGAGTCTTCGATGGGCATGGGGAATTTGGAACACAGTGCTCTCAGTTTGTAAAACGCAAGCTATGTGAAAACTTGCTTAGGAATAGTAGGTTCCATACTGATGCTGTTGAGGCGTGCCATGCGGCTTTTCTCACAACTAATTCACAATTACATGCTGATAACTTGGATGATAGCATGAGCGGTACTACTGCAATTACTGTTTTAGTTAGAGGTAGGACTATATATGTTGCTAATTCAGGTGATTCGAGAGCGGTTCTGGCTGAGAAGAGAGGGAAGGATCTTGTGGCTGTAGACCTCTCAATTGATCAAACTCCATTTCGGACCGATGAACTTGAACGTGTGAAGCTTTGTGGTGCTAGAGTTCTTACACTTGATCAAATTGAAGGGCTAAAGAACCCAGATGTGCAGTGCTGGGGAACAGAAGAAGGAGATGATGGTGATCCACCTAGGTTGTGGGTGCCTAATGGGATGTATCCTGGCACAGCTTTCACAAGAAGTATAGGTGATTCAATTGCTGAGACTATTGGAGTTGTTGCTACACCTGAAATTATTGTTTTGGAGCTGACACCAGATCATCCTTTCTTTGTGATTGCCAGTGATGGAGTGTTCGAGTTTCTTTCCAGCCAAGCCGTGGTTGACATGGTTTCCAAATTTAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCGGAGTCTTACAGACTTTGGCTTCAGTTTGAAACTCGAACAGATGATATCACTGTGATTGTTGTGCATATTAGTGGGCTAACCAATGTGGTTGTTACTGAATCAGCAAGTGGTGGTACTTTTGTTCGATCTTCTATTCCTCAAGTTGTGGAAGTGACTGGATCAGAATCTCCCTCTACCTTTGGCTGGAATTCTAGAAATCATCGTGCTAGGCAAGATTTATCAAGGGCACGTCTTCGAGCCATTGAAAGTTCCCTAGAGAATGGGCAAGTCTGGGTGCCTCCATCTCCAGCCCACAGGAAGACTTGGGAAGAAGAAGCACATATTGCACGGGCATTGCATGACCATTTCCTCTTCAGAAAACTTACTGATTCTCAGTGCCAAGTCTTATTGGATTGCATGCAAAGAGTTGAGGTCCTGCCAGGGCAAATTATAGTCGAACAGGGTGGTGAAGGTGACTGTTTTTATGTTGTTGGTAATGGAGAATTTGAGGTCTTGGCAACCCAGGAAGAAAACAACGGAGAGGTTCCTCGGGTTCTACAGCACTATACAGCTGAGAAGTTATCCTCATTTGGTGAACTGGCATTAATGTATAATAAACCACTTCAAGCCTCAGTTCGTGCTGTGACAAGTGGAACGCTTTGGGCTTTGAAAAGAGAGGACTTCCGCGGAATTCTTATATCAGAATTTTCTAATTTGTCGTCTTTGAAATTGCTTCGCTCTGTAGATCTCCTATCTAGGTTAACAATCTTGCAATTGAGTCACGTTGCAGATTGCCTTTCTGAAGTTTCCTTCTCAGATGGGCAGCTGATAGTTGATGGGAGTGAAGGCTCATGTGCATTGTACATTATTCAGAAGGGACAAGTAAGGATTACTTTTGATGCAGATATAATGAGCAGTTCAAACTTCTACAGCCTCAGTTGTGCCAATCAAAAAGAGGATGATACTGCACATGGCGGTAAAGAGATTTCAGTCATGAAGAATGAGGAGAGTTATTTCGGCGAATGGGCTCTTCTTGGTGAACGTATTGGTTTCTTACATGCAGTTGCTGTTGGAGATGTTACGTGTTCTATTTTAACAAAGGAGAAGTTTGAGTCAGTTGTCGGCCCTTTACCGAAGCTTTCTCAAGTTGATCAAAAGGTGAAGGACCATTCTTCAGACTCTCTCCATGATTCTGCCAAAATCATTGATATTTCAGATCTTTCAAAAGTTGAGCTCACTGATCTGGAGTGGAGAACATGCTTATATTCCACGGATTACAGCGAGATTGGGCTTGTGCGATTAAGGAACACAGAAAACTTGCTTACTCTAAAACGGTATACAAGGCAAAAGGTCAAAAGGCTGGGAAATGAAGCACAAGTTTTGAAGGAGAAAAATCTTTTGAAGAGCATCAGCCCTTCAGCTTGCTTGCCGCAATTTCTTTGCACTTGTTTAGATCAATCACATGCTGGAATATTGCTGAAAACATGCCTTGCTTGTCCCTTGTCTTCAATACTTCACACCCCACTTGATGAATCTTCTGCACGTTTCTGCGCCGCCTCTCTTGTTATTGCATTGGAAGATATGCACAAGCTTGGTGTTCTCTACAGAGGAATCTCTCATGATGTTCTAATGCTGGATCAATTTGGACGGATACAGTTGGTGGACTTCAGATTTGGGAAGAAAATATCTGCAGACAGAACATATACGATTTGTGGAATGGCAGACTTTTTAGCACCTGAGATAGTTCAGGGAAATGGTCATGGTTTTGCTGCTGACTGGTGGGCACTGGGAGTCCTAATCTATTTCATGCTGAAGGGTGAAATGCCGTTTGGATCGTGGAGACAAAGTGAGCTCGATACTTTTTCGAAGATCGCAAAAGGACAGTTAAATCTTCCCCAGATTTTTAGTCCTGAAGCCATTGATCTCATTGTTAAGTTACTTGAAGTTGATGAGAAGAAAAGACTCGGAAGCGAAAATCCGAACTCTGTTAGGAATCATCCGTGGTTTGATGGCATTGATTGGAAAGGGATCAGTGATGGCACCTTTCCTGTTCCGGACGCAATTACTTCCCGCATGGCTCAACATTTGGAGAGTTACCCTGAGGATTGCAATGTTTCTTTAGCAAACCCACCTCAAGATCCTGAAGAACAGGATGTCCCCGAGTGGATCGACGATTGGTAG 3222 43.33 MGCVYSRVCIGEATTPRTATRNVKTDGEIHTISSSSSDSQECEVVDHLNSNRDSEVGITRLSRVSSQFLPADGSRIVKVPSGNFELRFSFLSQRGYYPDALDKANQDSFCIHTPFGTSPDDHFFGVFDGHGEFGTQCSQFVKRKLCENLLRNSRFHTDAVEACHAAFLTTNSQLHADNLDDSMSGTTAITVLVRGRTIYVANSGDSRAVLAEKRGKDLVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIIVLELTPDHPFFVIASDGVFEFLSSQAVVDMVSKFKDPRDACAAIVAESYRLWLQFETRTDDITVIVVHISGLTNVVVTESASGGTFVRSSIPQVVEVTGSESPSTFGWNSRNHRARQDLSRARLRAIESSLENGQVWVPPSPAHRKTWEEEAHIARALHDHFLFRKLTDSQCQVLLDCMQRVEVLPGQIIVEQGGEGDCFYVVGNGEFEVLATQEENNGEVPRVLQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVDLLSRLTILQLSHVADCLSEVSFSDGQLIVDGSEGSCALYIIQKGQVRITFDADIMSSSNFYSLSCANQKEDDTAHGGKEISVMKNEESYFGEWALLGERIGFLHAVAVGDVTCSILTKEKFESVVGPLPKLSQVDQKVKDHSSDSLHDSAKIIDISDLSKVELTDLEWRTCLYSTDYSEIGLVRLRNTENLLTLKRYTRQKVKRLGNEAQVLKEKNLLKSISPSACLPQFLCTCLDQSHAGILLKTCLACPLSSILHTPLDESSARFCAASLVIALEDMHKLGVLYRGISHDVLMLDQFGRIQLVDFRFGKKISADRTYTICGMADFLAPEIVQGNGHGFAADWWALGVLIYFMLKGEMPFGSWRQSELDTFSKIAKGQLNLPQIFSPEAIDLIVKLLEVDEKKRLGSENPNSVRNHPWFDGIDWKGISDGTFPVPDAITSRMAQHLESYPEDCNVSLANPPQDPEEQDVPEWIDDW 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43940579 43946574 - evm.model.ptg000008l.811 HCH8g0724 549822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0724 1073 Gene3D Transferase(Phosphotransferase) domain 1 847 1029 - -
HCH8g0724 1073 SMART serkin_6 770 1016 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0724 1073 Gene3D Jelly Rolls 586 742 IPR014710 -
HCH8g0724 1073 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 445 585 - -
HCH8g0724 1073 Pfam Protein kinase domain 773 1016 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0724 1073 Pfam Protein phosphatase 2C 116 355 IPR001932 -
HCH8g0724 1073 MobiDBLite consensus disorder prediction 1054 1073 - -
HCH8g0724 1073 SMART PP2C_4 83 375 IPR001932 -
HCH8g0724 1073 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
HCH8g0724 1073 CDD CAP_ED 471 579 IPR000595 -
HCH8g0724 1073 ProSiteProfiles PPM-type phosphatase domain profile. 87 377 IPR001932 -
HCH8g0724 1073 Gene3D Jelly Rolls 440 579 IPR014710 -
HCH8g0724 1073 Gene3D Phosphorylase Kinase; domain 1 761 846 - -
HCH8g0724 1073 PRINTS cAMP-dependent protein kinase signature 507 521 - -
HCH8g0724 1073 PRINTS cAMP-dependent protein kinase signature 492 506 - -
HCH8g0724 1073 PRINTS cAMP-dependent protein kinase signature 717 729 - -
HCH8g0724 1073 PRINTS cAMP-dependent protein kinase signature 542 551 - -
HCH8g0724 1073 ProSiteProfiles Protein kinase domain profile. 762 1016 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0724 1073 Gene3D - 84 378 IPR036457 -
HCH8g0724 1073 SUPERFAMILY PP2C-like 75 379 IPR036457 -
HCH8g0724 1073 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 82 379 - -
HCH8g0724 1073 CDD PP2Cc 103 377 IPR001932 -
HCH8g0724 1073 Pfam Cyclic nucleotide-binding domain 490 579 IPR000595 -
HCH8g0724 1073 ProSiteProfiles cAMP/cGMP binding motif profile. 597 723 IPR000595 -
HCH8g0724 1073 CDD CAP_ED 597 729 IPR000595 -
HCH8g0724 1073 SUPERFAMILY Protein kinase-like (PK-like) 760 1024 IPR011009 -
HCH8g0724 1073 SUPERFAMILY cAMP-binding domain-like 451 580 IPR018490 -
HCH8g0724 1073 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 344 1073 - GO:0004691(PANTHER)|GO:0005952(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
HCH8g0724 1073 SUPERFAMILY cAMP-binding domain-like 589 727 IPR018490 -
HCH8g0724 1073 SMART cnmp_10 471 594 IPR000595 -
HCH8g0724 1073 SMART cnmp_10 597 736 IPR000595 -
HCH8g0724 1073 ProSiteProfiles cAMP/cGMP binding motif profile. 471 579 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0165 HCH-Chr7:1106621 HCH8g0724 HCH-Chr8:43940579 6.10E-30 dispersed
HCH7g1153 HCH-Chr7:44411185 HCH8g0724 HCH-Chr8:43940579 7.80E-115 dispersed
HCH8g0724 HCH-Chr8:43940579 HCH3g0004 HCH-Chr3:57801 1.70E-24 dispersed
HCH8g0724 HCH-Chr8:43940579 HCH6g1641 HCH-Chr6:49424891 2.80E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81701 PF00069 Pkinase 2.70E-33 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0724 - - - 0.0