Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0739 ATGAGCGGAGGAGAGGATCGAGGAATGGATAACTTAGTTCCGAAGAATGATCAAAGTAATAGTGCGGTACCAGTACCGAGTAATATGGTGATCTGTGATGGTTCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACTGGTTTAAGTGGTGCAGTATTGCCTGAGAATCCTCATTCTAAGCTGCAGTATGGTGATCGATCGGAGTCTGAGGGGTCGGTGGCGGTGGTGCAGAGTCAGTCCCAGGCAAAGTCCCCACAGCATTTGATGGTCTTGCCTGTGGGAATGCAGGCACCTCTTTCTGTGAGAAAGCCAGATTCTCCGAAGTCTAGATCAAGACCTAACGTTGAAATTAAAGATGTCACTCCAAAGAAACAAAAACAGTGTAACTGCAAACACTCCCGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGTGATGGATGTAACTGCACAAATTGTTATAACAATGTCGATAATGAAGCTTCCAGGAGAGAAGCAGTAGAAGCTACTTTAGAGCGTAATCCAAATGCATTCCGACCAAAAATTGCAAGCAGCCCACATGGGACACGAGAGAGCAGGGATGAAATTGGAGAGGTAGTAGTGCTGGCAAAGCACAACAAAGGATGCCATTGCAAGAAATCTGGTTGCTTAAAAAAGTATTGTGAGTGCTTCCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATTGACTGTAAGAATTTCGAGGGAAGTGAAGAGAGACAAGCCCTTTTCCATGGTGACCATGCCAACACGGCAAATATTCAACAGGCAGCCAATGCTGTTGCAACTGGAGCTATTGGATCCTCTGGTTATGCAAAGAAAAGAAAAGGCCCAGAACTATGCTTTGGGCCTACAGGGAAGGATCCCTCCCTTCACCGGGTTGTTCAATTTCATCAGGCTAATATGGCAACTGCTGCTTCTACTTCGTCTTCCCCTCCTGTTGCTCATATTGGCAGCTCTGCAGCATTTTGCCCTTCAAAGTTTTCGTTCAGGTCTTTATTAGCAGACCTCATCCAACCACAAGACTTGAGGGACCTTTGCTCTGTTTTAGTGGTTTCAAGTGCAGCTGCCAAGACCCTAGCAGAACAAAGAATTGCTCAGAAGCAGGTAAATGATCCAGTACAAGCTTCTCTTGCTTCATCATCTGAAGATAGCTTGCAGCACCAGAAGGCAGATAAGAAAGCTGCAGATGGTGAGTGTCGAAGTACATACCAAGGTGATAAAATTAAACATGATGATTCGAACACGGAGAGTTTGGATACGACAAAAGCAAGGCCAATGTCTCCTGGAACTTTAGCTTTGATGTGTGATGAACAAGATACAATGTTCATGGGAGATCCACCCAATGGGTTGGTAGACCATGGTTGCAGCACATCATCACGTATGCCTGATGAAAAGTCTGTGTCAGAAGTCTATGCCGAGCAGGAAAGGATTGTATTGACAAAGTTTCGAGATTGTCTCAATAAACTCATCACTCTTGGAGAGATAAAAGAAAGAAGCTGTGCTTCTTTATCCAGAAGTGAAGCCAGGAATGAGAAACACCACTACAACAACTGCAACTCGAGCGGAGGTTTTCAACAGCGTACGATTAGTAATGGGGTCGTGAAAAGTGTTGCTCTCTCTGCACCCAAAATGCCACCAATTGCTACTGCTGTTCTTCATCCTGGTAATGATCTACTCCCCCAAATCCTACCCCTTTTCGAAAACGGGAAGAGTAAACCACACGTTGACAAAGAAACGTAG 1779 44.86 MSGGEDRGMDNLVPKNDQSNSAVPVPSNMVICDGSAKKLARQLDFTGLSGAVLPENPHSKLQYGDRSESEGSVAVVQSQSQAKSPQHLMVLPVGMQAPLSVRKPDSPKSRSRPNVEIKDVTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCYNNVDNEASRREAVEATLERNPNAFRPKIASSPHGTRESRDEIGEVVVLAKHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFEGSEERQALFHGDHANTANIQQAANAVATGAIGSSGYAKKRKGPELCFGPTGKDPSLHRVVQFHQANMATAASTSSSPPVAHIGSSAAFCPSKFSFRSLLADLIQPQDLRDLCSVLVVSSAAAKTLAEQRIAQKQVNDPVQASLASSSEDSLQHQKADKKAADGECRSTYQGDKIKHDDSNTESLDTTKARPMSPGTLALMCDEQDTMFMGDPPNGLVDHGCSTSSRMPDEKSVSEVYAEQERIVLTKFRDCLNKLITLGEIKERSCASLSRSEARNEKHHYNNCNSSGGFQQRTISNGVVKSVALSAPKMPPIATAVLHPGNDLLPQILPLFENGKSKPHVDKET 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44072214 44077915 + evm.model.ptg000008l.796 HCH8g0739 549837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0739 592 ProSiteProfiles CRC domain profile. 124 248 IPR005172 -
HCH8g0739 592 MobiDBLite consensus disorder prediction 1 27 - -
HCH8g0739 592 MobiDBLite consensus disorder prediction 97 118 - -
HCH8g0739 592 MobiDBLite consensus disorder prediction 398 431 - -
HCH8g0739 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 125 160 IPR005172 -
HCH8g0739 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 211 245 IPR005172 -
HCH8g0739 592 SMART CXC_2 123 163 IPR033467 -
HCH8g0739 592 SMART CXC_2 208 249 IPR033467 -
HCH8g0739 592 PANTHER TESMIN/TSO1-RELATED 68 510 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
HCH8g0739 592 MobiDBLite consensus disorder prediction 388 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1243 HCH-Chr7:45281124 HCH8g0739 HCH-Chr8:44072214 2.90E-29 dispersed
HCH10g0471 HCH-Chr10:3853563 HCH8g0739 HCH-Chr8:44072214 2.90E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34023 PF03638 TCR 2.00E-12 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0739 - - - 0.0