Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0739 ATGAGCGGAGGAGAGGATCGAGGAATGGATAACTTAGTTCCGAAGAATGATCAAAGTAATAGTGCGGTACCAGTACCGAGTAATATGGTGATCTGTGATGGTTCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACTGGTTTAAGTGGTGCAGTATTGCCTGAGAATCCTCATTCTAAGCTGCAGTATGGTGATCGATCGGAGTCTGAGGGGTCGGTGGCGGTGGTGCAGAGTCAGTCCCAGGCAAAGTCCCCACAGCATTTGATGGTCTTGCCTGTGGGAATGCAGGCACCTCTTTCTGTGAGAAAGCCAGATTCTCCGAAGTCTAGATCAAGACCTAACGTTGAAATTAAAGATGTCACTCCAAAGAAACAAAAACAGTGTAACTGCAAACACTCCCGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGTGATGGATGTAACTGCACAAATTGTTATAACAATGTCGATAATGAAGCTTCCAGGAGAGAAGCAGTAGAAGCTACTTTAGAGCGTAATCCAAATGCATTCCGACCAAAAATTGCAAGCAGCCCACATGGGACACGAGAGAGCAGGGATGAAATTGGAGAGGTAGTAGTGCTGGCAAAGCACAACAAAGGATGCCATTGCAAGAAATCTGGTTGCTTAAAAAAGTATTGTGAGTGCTTCCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATTGACTGTAAGAATTTCGAGGGAAGTGAAGAGAGACAAGCCCTTTTCCATGGTGACCATGCCAACACGGCAAATATTCAACAGGCAGCCAATGCTGTTGCAACTGGAGCTATTGGATCCTCTGGTTATGCAAAGAAAAGAAAAGGCCCAGAACTATGCTTTGGGCCTACAGGGAAGGATCCCTCCCTTCACCGGGTTGTTCAATTTCATCAGGCTAATATGGCAACTGCTGCTTCTACTTCGTCTTCCCCTCCTGTTGCTCATATTGGCAGCTCTGCAGCATTTTGCCCTTCAAAGTTTTCGTTCAGGTCTTTATTAGCAGACCTCATCCAACCACAAGACTTGAGGGACCTTTGCTCTGTTTTAGTGGTTTCAAGTGCAGCTGCCAAGACCCTAGCAGAACAAAGAATTGCTCAGAAGCAGGTAAATGATCCAGTACAAGCTTCTCTTGCTTCATCATCTGAAGATAGCTTGCAGCACCAGAAGGCAGATAAGAAAGCTGCAGATGGTGAGTGTCGAAGTACATACCAAGGTGATAAAATTAAACATGATGATTCGAACACGGAGAGTTTGGATACGACAAAAGCAAGGCCAATGTCTCCTGGAACTTTAGCTTTGATGTGTGATGAACAAGATACAATGTTCATGGGAGATCCACCCAATGGGTTGGTAGACCATGGTTGCAGCACATCATCACGTATGCCTGATGAAAAGTCTGTGTCAGAAGTCTATGCCGAGCAGGAAAGGATTGTATTGACAAAGTTTCGAGATTGTCTCAATAAACTCATCACTCTTGGAGAGATAAAAGAAAGAAGCTGTGCTTCTTTATCCAGAAGTGAAGCCAGGAATGAGAAACACCACTACAACAACTGCAACTCGAGCGGAGGTTTTCAACAGCGTACGATTAGTAATGGGGTCGTGAAAAGTGTTGCTCTCTCTGCACCCAAAATGCCACCAATTGCTACTGCTGTTCTTCATCCTGGTAATGATCTACTCCCCCAAATCCTACCCCTTTTCGAAAACGGGAAGAGTAAACCACACGTTGACAAAGAAACGTAG 1779 44.86 MSGGEDRGMDNLVPKNDQSNSAVPVPSNMVICDGSAKKLARQLDFTGLSGAVLPENPHSKLQYGDRSESEGSVAVVQSQSQAKSPQHLMVLPVGMQAPLSVRKPDSPKSRSRPNVEIKDVTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCYNNVDNEASRREAVEATLERNPNAFRPKIASSPHGTRESRDEIGEVVVLAKHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFEGSEERQALFHGDHANTANIQQAANAVATGAIGSSGYAKKRKGPELCFGPTGKDPSLHRVVQFHQANMATAASTSSSPPVAHIGSSAAFCPSKFSFRSLLADLIQPQDLRDLCSVLVVSSAAAKTLAEQRIAQKQVNDPVQASLASSSEDSLQHQKADKKAADGECRSTYQGDKIKHDDSNTESLDTTKARPMSPGTLALMCDEQDTMFMGDPPNGLVDHGCSTSSRMPDEKSVSEVYAEQERIVLTKFRDCLNKLITLGEIKERSCASLSRSEARNEKHHYNNCNSSGGFQQRTISNGVVKSVALSAPKMPPIATAVLHPGNDLLPQILPLFENGKSKPHVDKET 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44072214 44077915 + evm.model.ptg000008l.796 HCH8g0739 549837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0739 592 ProSiteProfiles CRC domain profile. 124 248 IPR005172 -
HCH8g0739 592 MobiDBLite consensus disorder prediction 1 27 - -
HCH8g0739 592 MobiDBLite consensus disorder prediction 97 118 - -
HCH8g0739 592 MobiDBLite consensus disorder prediction 398 431 - -
HCH8g0739 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 125 160 IPR005172 -
HCH8g0739 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 211 245 IPR005172 -
HCH8g0739 592 SMART CXC_2 123 163 IPR033467 -
HCH8g0739 592 SMART CXC_2 208 249 IPR033467 -
HCH8g0739 592 PANTHER TESMIN/TSO1-RELATED 68 510 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
HCH8g0739 592 MobiDBLite consensus disorder prediction 388 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0739 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1243 HCH-Chr7:45281124 HCH8g0739 HCH-Chr8:44072214 2.90E-29 dispersed
HCH10g0471 HCH-Chr10:3853563 HCH8g0739 HCH-Chr8:44072214 2.90E-167 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0471 . 1 520 CPP Transcription Factor Family AT2G20110 54.1 1.6e-138 490.0
HCH8g0739 . 36 520 CPP Transcription Factor Family AT2G20110 51.8 2.7e-122 436.0
HCH10g0471 . 93 527 CPP Transcription Factor Family AT4G29000 62.3 3.7e-149 525.4
HCH8g0739 . 4 518 CPP Transcription Factor Family AT4G29000 53.2 8.3e-141 497.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34023 PF03638 TCR 2.00E-12 No_clan HCH TF