Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0750 ATGTCGTCTCCGGCCCCTACTTCGCCGCCGGCTACCAACACTACCTCTCCCCCACCGCCCACTCCCGATGCACCACCCCCATCGACACCGTTGCCTCCGCCACCCTCTACCACTCCTTCGCCGCCTCCACCGGATATTTCCACTCCTTCGCCGCCGCCGCCGGATATTTCCACGCCTTCGCCGCCTCCACCTGACAGTTCCACTCCTTCTTCACCGTCAACCCCTTCAATCTCTCCTCCTCCTCCGTCGTCTACCACCACGCCATCTCCTCCACAGCTAACACCTTCTAATCCTGGTTCACCGGCAAACCCCGGAGGAATTCAGCCACCTCCACCCCCGCCGTTGTCACCGTCGCAGTCAGTTTCATCAGGACTCGTGGCTGGGATGACAATTGCTGGGGTTGTAGTGATTGTGGTTGCTTTGATCATTACTTGGTTTTGCGTTAAAAAGAAGAAGAGACGTGACGTGGAATCTCACTATCCGCCACCGCCGGCGCCACCGCTGGCTTTTAAAGATGGAGCTTATAATCAGCAGCAGCAGCAGCAGCATTACTGGCAATCAAATCCTCCTCCCCCGGCAAATCATGTCGTTGGGGCGGTACCGAAGCCGAAGCCGTCTCCTCCACCAGCATCACGGCCGCCTCTTTCACCTCCTGTTATAAGCAGTAGTGGAGGATCTGGCTCTAATTACTCAGGGTCTGAAAATTCATTGGCTACGGCCCCATCTGGGATTTCTTTAGGTTTCTCACAAAGTACTTTTACCTATGAAGAATTAGCCATGGCTACTGATGGATTCTCTGATGCTAATCTGCTTGGACAAGGGGGATTCGGATATGTTCATAGAGGGGTTTTTCCTAATGGAAAGGAAGTGGCTGTGAAGCAACTTAAGGCCGGAAGCGGTCAAGGAGAGCGTGAGTTTCAAGCTGAAGTCGAGATAATTAGCAGAGTTCATCACAGACATCTTGTTTCTTTGGTGGGATATTGCATCACTGGTTCACAAAGATTGCTTGTTTATGAATTTGTTCCTAATAACACTTTGGAGTTCCATTTGCATGGGAAAGGAAAACTCACTATGGATTGGTCAACAAGACTGAAAATTGCATTAGGGTCTGCAAAGGGGTTGGCTTACCTTCATGAGGACTGTAATCCTAAGATTATTCATCGTGATATAAAAGCAGCGAATATTCTATTGGATCTCAAATTTGAAGCGAAGGTTGCAGACTTCGGACTTGCAAAGTTATCTTCTGATGTTAATACCCATGTTTCAACCCGAGTGATGGGCACTTTCGGATATCTTGCTCCTGAATACGCTGCCAGTGGAAAACTTACCGAGAAATCGGATGTCTACTCCTACGGGGTGATGCTTTTGGAGTTGATTACTGGACGCAGGCCTGTCGATGCAACTCAGTCCTTCATGGAGGATGGATTGCTAGATTGGGCAAGGCCTCTACTCCTTAAAGCCACAGAAGAGGGAATCTATGACGGTCTCGTAGATCCAAAGTTGCATGATAACTACAATCACAATGAGATGGCTCGCATGGTTGCTTGTGCTGCCGCTTGTGTACGTCATTCGGCAAGGCGTCGACCACGGATGAGCCAGGTCGTTCGTGCTCTGGAAGGTGACTCATCTCTTTCTGATCTTAATGAAGGAACCAGGCCTGGACACAGCACCGCCTACAATTCTTATGGAAGCTCTGATTACGACACTGCACAATACAACGAGGACCTGAAAAAATTCAGGAAGATGGCATTGGCAAGCCAGGAGTATGGCGCCGGTAGCGAGTATAGCGAGCCAACAAGTGAGTATGGTTTGTATCCATCCGCCTCAAGCGGCAACGTTCAAACCACCCAAGAAACGGGGACGACAACACTGAAAAGAGAAAGTGAAGGTTTTAGCAGAAGCTCTTGA 1908 49.9 MSSPAPTSPPATNTTSPPPPTPDAPPPSTPLPPPPSTTPSPPPPDISTPSPPPPDISTPSPPPPDSSTPSSPSTPSISPPPPSSTTTPSPPQLTPSNPGSPANPGGIQPPPPPPLSPSQSVSSGLVAGMTIAGVVVIVVALIITWFCVKKKKRRDVESHYPPPPAPPLAFKDGAYNQQQQQQHYWQSNPPPPANHVVGAVPKPKPSPPPASRPPLSPPVISSSGGSGSNYSGSENSLATAPSGISLGFSQSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVFPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGKLTMDWSTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYAASGKLTEKSDVYSYGVMLLELITGRRPVDATQSFMEDGLLDWARPLLLKATEEGIYDGLVDPKLHDNYNHNEMARMVACAAACVRHSARRRPRMSQVVRALEGDSSLSDLNEGTRPGHSTAYNSYGSSDYDTAQYNEDLKKFRKMALASQEYGAGSEYSEPTSEYGLYPSASSGNVQTTQETGTTTLKRESEGFSRSS 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44129632 44132501 - evm.model.ptg000008l.785 HCH8g0750 549848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0750 635 MobiDBLite consensus disorder prediction 1 122 - -
HCH8g0750 635 Gene3D Phosphorylase Kinase; domain 1 223 340 - -
HCH8g0750 635 Pfam Protein tyrosine and serine/threonine kinase 270 538 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0750 635 ProSiteProfiles Protein kinase domain profile. 265 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0750 635 PRINTS Proline rich extensin signature 23 44 - -
HCH8g0750 635 PRINTS Proline rich extensin signature 48 64 - -
HCH8g0750 635 PRINTS Proline rich extensin signature 8 20 - -
HCH8g0750 635 Gene3D Transferase(Phosphotransferase) domain 1 341 551 - -
HCH8g0750 635 MobiDBLite consensus disorder prediction 194 216 - -
HCH8g0750 635 MobiDBLite consensus disorder prediction 217 236 - -
HCH8g0750 635 SUPERFAMILY Protein kinase-like (PK-like) 244 538 IPR011009 -
HCH8g0750 635 MobiDBLite consensus disorder prediction 543 565 - -
HCH8g0750 635 FunFam Proline-rich receptor-like protein kinase PERK1 341 549 - -
HCH8g0750 635 MobiDBLite consensus disorder prediction 544 565 - -
HCH8g0750 635 ProSitePatterns Protein kinases ATP-binding region signature. 271 293 IPR017441 GO:0005524(InterPro)
HCH8g0750 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0750 635 FunFam proline-rich receptor-like protein kinase PERK1 243 340 - -
HCH8g0750 635 MobiDBLite consensus disorder prediction 592 635 - -
HCH8g0750 635 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 80 582 IPR047117 -
HCH8g0750 635 MobiDBLite consensus disorder prediction 600 629 - -
HCH8g0750 635 SMART serkin_6 265 538 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0750 635 MobiDBLite consensus disorder prediction 1 118 - -
HCH8g0750 635 MobiDBLite consensus disorder prediction 176 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0628 HCH-Chr13:4892828 HCH8g0750 HCH-Chr8:44129632 4.10E-124 dispersed
HCH1g1033 HCH-Chr1:58269519 HCH8g0750 HCH-Chr8:44129632 2.50E-126 dispersed
HCH2g0440 HCH-Chr2:47723369 HCH8g0750 HCH-Chr8:44129632 4.80E-155 dispersed
HCH6g0117 HCH-Chr6:1465601 HCH8g0750 HCH-Chr8:44129632 4.70E-85 dispersed
HCH7g0254 HCH-Chr7:1751507 HCH8g0750 HCH-Chr8:44129632 1.10E-60 dispersed
HCH8g0026 HCH-Chr8:1079082 HCH8g0750 HCH-Chr8:44129632 3.60E-76 dispersed
HCH8g0646 HCH-Chr8:43267767 HCH8g0750 HCH-Chr8:44129632 1.50E-79 dispersed
HCH8g0661 HCH-Chr8:43383304 HCH8g0750 HCH-Chr8:44129632 5.10E-83 dispersed
HCH8g0750 HCH-Chr8:44129632 HCH8g1000 HCH-Chr8:46079452 4.10E-74 dispersed
HCH9g0850 HCH-Chr9:6038184 HCH8g0750 HCH-Chr8:44129632 3.10E-65 dispersed
HCH11g0894 HCH-Chr11:39884252 HCH8g0750 HCH-Chr8:44129632 4.80E-65 transposed
HCH7g0551 HCH-Chr7:4381580 HCH8g0750 HCH-Chr8:44129632 1.50E-40 transposed
HCH10g0465 HCH-Chr10:3807132 HCH8g0750 HCH-Chr8:44129632 1.70E-187 wgd
HCH12g0307 HCH-Chr12:1750906 HCH8g0750 HCH-Chr8:44129632 3.00E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81702 PF07714 PK_Tyr_Ser-Thr 5.20E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0750 - - - 0.0