Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0766 ATGGAGAATAAGAGTAATGGAAGCTCTGAATCCTATGTGAAGCTTCCAAAGATCATTAAATTCACGAAGCTCTTCATTAATGGAGAATTCGTTGATTCAGTTTCAGGAAAAACATTTGAGACGATAGATCCAAGAACTGGAGAAGTAATAGCGAAGATATCAGAAGGAGATAAAGAAGACGTCGATCTTGCTGTTAAAGCTGCCCGTGAAGCCTTTGACCATGGCCCTTGGCCTCGTATGTCCGGCTCCGAGAGGGGAAAGATAATGATGAAACTAGCGGATCTGATCGATGAACACGTGGAGGAATTGGCAGCGTTGGAAACAATTGATGCTGGAAAACTATATCAAGCATGCAAAATCGTAGACATTCCAGGGGCTGCAAATACGCTACGATACTACGCAGGTGCAGCGGATAAAATCCATGGAGAAGTATGTAAAATGGCTAGACAGTTTCATGGGTACACGTTGCTTGAGCCGATTGGCGTCGTCGGACACATAATACCGTGGAATTTTCCGACGACCATGTTCTTCTTGAAGGTCAGTCCAGCCTTAGCCGCCGGCTGCACCATGATTGTCAAGCCCGCCGAGCAGACACCGCTCACCGCTCTCTTCTATGCTCATCTTGCTCACCTGGCTGGTATTCCGGATGGAGTATTGAATGTGGTGACCGGATATGGACCCACCGCCGGAGCTGCCATTAGCTCTCACATGGACGTCGATAAAGTAAGTTTCACCGGGTCAACGAAAGTTGGACGGGGAATAATGCAGGCGGCGGCGGAGAGCAATTTGAAGCAGGTGTCGCTGGAATTAGGAGGCAAATCGCCGCTCATAATCTTCGATGACGCCGACTTGGATAAAGCCACTGATCTTGCTCTTATCGGCATTTTTTATAACAAGGGAGAAATATGCGTGGCCAGTTCTCGGGTTTTTGTTCAAGAAGGGATTTATGATGAATTTGTGAAAAAGATTAATGAAAAAGCAAAAGCTTGGGTGGTTGGAGACCCTTTTGATCCTAAAGTTCAATACGGACCCCAGGTGGATAGCAAACAATTTGAGAAAATCATGAAATACATAGAACATGGTAAGAGTGAAGGAGCCACTCTACTGACAGGAGGAAAGCGCATAGGTGAATTGGGCTATTACATTGAGCCCACTATCTTCACCAATGTCAAGGAAGACTCATTGATTGTCCAAGACGAAATATTCGGGCCAGTTCTCTCCCTCATGAAATTCAAGACAATTGAAGACGCGATCAAGAGCGCAAACAATACAAAGTATGGGCTGGCGGCCGGGATCGTGACACAGAATATCGACGTAGCGAACACGGTGTCGAGGTCAATCCGGGCGGGAACCGTGTGGATAAATTGCTACTTTGCTTTCGATGCAAGCTGCCCTTTTGGAGGGTACAAAATGAGTGGATATGGTAGAGATTCGGGGATGCATGGTCTCCATAAATATCTTCAAATCAAAACCATCGTCACTCCTTTAATCAACTCTCCTTGGCTTTAA 1509 46.06 MENKSNGSSESYVKLPKIIKFTKLFINGEFVDSVSGKTFETIDPRTGEVIAKISEGDKEDVDLAVKAAREAFDHGPWPRMSGSERGKIMMKLADLIDEHVEELAALETIDAGKLYQACKIVDIPGAANTLRYYAGAADKIHGEVCKMARQFHGYTLLEPIGVVGHIIPWNFPTTMFFLKVSPALAAGCTMIVKPAEQTPLTALFYAHLAHLAGIPDGVLNVVTGYGPTAGAAISSHMDVDKVSFTGSTKVGRGIMQAAAESNLKQVSLELGGKSPLIIFDDADLDKATDLALIGIFYNKGEICVASSRVFVQEGIYDEFVKKINEKAKAWVVGDPFDPKVQYGPQVDSKQFEKIMKYIEHGKSEGATLLTGGKRIGELGYYIEPTIFTNVKEDSLIVQDEIFGPVLSLMKFKTIEDAIKSANNTKYGLAAGIVTQNIDVANTVSRSIRAGTVWINCYFAFDASCPFGGYKMSGYGRDSGMHGLHKYLQIKTIVTPLINSPWL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44285862 44291143 + evm.model.ptg000008l.769 HCH8g0766 549864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0766 502 SUPERFAMILY ALDH-like 17 496 IPR016161 GO:0016491(InterPro)
HCH8g0766 502 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 26 289 - -
HCH8g0766 502 Pfam Aldehyde dehydrogenase family 30 492 IPR015590 GO:0016491(InterPro)
HCH8g0766 502 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491(InterPro)
HCH8g0766 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 461 IPR016163 GO:0016620(InterPro)
HCH8g0766 502 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 21 494 - GO:0004029(PANTHER)
HCH8g0766 502 FunFam Aldehyde dehydrogenase3 272 461 - -
HCH8g0766 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 490 IPR016162 GO:0016491(InterPro)
HCH8g0766 502 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491(InterPro)
HCH8g0766 502 FunFam Aldehyde dehydrogenase, putative 464 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0957 HCH-Chr2:52943966 HCH8g0766 HCH-Chr8:44285862 5.50E-96 dispersed
HCH8g0766 HCH-Chr8:44285862 HCH8g1377 HCH-Chr8:48506955 2.20E-171 dispersed
HCH8g0766 HCH-Chr8:44285862 HCH4g0009 HCH-Chr4:88079 6.40E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0766 K12355 - csv:101219029 835.869