Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0769 ATGAAGAACATTCTAAACTTCTCCCTTTTCCTCTTCACTTTCCTACTAATTTCCACTTTCATCTGCCTCGTTGCTTCCGACCAAACCCTCCACATTGTCGGCCACGGCATTCTCACCGATGCCGAAGCTTCATACATCAAACAGCGCCAACTTCTTTACTACAGAGACGAATTCAACGACCGTGGCGAGGAAATTACCATAGACCCATCTCTTGTTTTTGAAAATGAAAGGATTAAAAATGCTTATATAGCTCTTCAAGCGTGGAAGCTAGCTATTTTATCTGACCCACAAAACCAAACCACTAACTGGGTTGGATCCGATGTGTGCAACTATAAAGGTGTTTACTGTGCTCCTGCACTGGATAACCCTAAGATCCGTACCGTCGCCGGTATTGATCTAAACCACGGCGACATTGCCGGGTACTTGCCGGAAGAGCTCGGTCTTCTTGCTGATCTTGCATTGTTTCATATCAACTCTAATAGATTCTGTGGCACGGTTCCTCGTAAGTTTGAGAAGCTAAAGTTGTTATATGAATTGGATCTCAGTAATAATAGATTTGCTGGGAAGTTTCCTGATGTGGTACTTGAGCTTCCCACGCTCAAGTTTTTGGATTTGAGATTTAATGAATTCGAAGGGAGTGTACCTAGAGAGCTATTCGATAAAGATCTAGACGCGATCTTTATCAATCATAATCGGTTTCGATTTGAATTGCCGGATAATTTCGGTAACTCTCCAGTTTCTGTTATTGTACTTGCTAATAACAAGTTTCATGGATGTTTGCCTTCGGGTTTGGGGAATATGACGAGGCTGAATGAGATTATTTTGATGAATAATGAGATTAGTTCTTGTTTGCCGCCGGAAATCGGGTCGTTGAAGAACTTGACGGTGTTTGATGTGAGCTCCAACGGGTTGCTGGGACCATTGCCGGAGACTTTTGGAGGACTAGTGAGTTTGGAGCAACTCAATGTGGCTAATAATTTTCTTACTGGGAAAATTCCTGAGAGTATTTGTGAGTTGCCGAAGCTTGAAAACTTTACGTTTTCTAATAATTTCTTTACGGGTGAGCCGCCGGCGTGTTTGAGGAAGGTTAAGGAGAGTAATGATAAGAGGAATTGCTTACCGGGTAGGCCAGTGCAGAGGCCTAGTGGACAATGTAAGGCGTTTTTGTCAAAGCCTGTGGATTGTAATGCCTTTAGATGTAGTTCTTCTTCGACGCCTCCTGAATTACCTGTGCCTCTGCCTGGTCATTCTCCACCTACAGGCAATATACCGCCATCGATACCGACACCGACATTTTCTCCGCCACCAGCCGCTCAGCCTCCTACTCATTCACAACCATCAGCGCCACCACTATTTCATTCTCCACCTACTGGCAATATTCCGCCTGCACCAGTATCACCCAATTTCCCTCCGTTGCCACCACAGTCACCCACAACACCGATACCGACTCCGACATTTTCTCCACCACAAACGTCACCTCCTACTCATTCACCACCATCATTGCCACCACTAGTTCATTCTCCACCTTTGCCTCCTTCAGTGCAACCTCCTTCACCTCTACCATCAACTCCTTCTACACCTACAACGCCCACATCACCGGCACTGCCACCATCATCACCACCTCAAGATCACCGTCCACCGGCACCACCATCAGCAGCTGTGCCGTCACCTCCATCGCCGCCTCAAGTCTACCGTCCACCTGCACCACCATCAGCAGCTGTGCCGTCACCTCCATCGCCGCCCCAAGTTTACCGTCCACCTGCACCGCCATCAGCCGCTGTGCCGACACCTCCATCGCCATCTCAAGTCTACCCTCCACCAGCCCCGCCTTCATCATCTGTACCGGCACCTCCATCGCCACCGTCTCAATCATATCCTCCTTTAAAACCGCCATCGGCACCGCCGTTACCAATGTACTCGCCGCCTCCACCACTTTTTCCTACTTTCCCTTCACCCCCTTCTTCACAAACTCCTCCCTACTGCATAAAACCACCAACTCCATCTTACTCTCCAAACCCTCCTATTAATCATCACGCCTCACCGCCGCCGCCACATTTTCAGTCTCCCCCTTCATTGCCATCACCACTCCCTCTTCCATGCATAGAACCCCCTCCTCCTCCTCCAGTTCCATGTGAAAATCCTCCACCATCTCCATCACCACCACCACCATCTCCACCGCCACCGCCACCTCCAACTCCGATATACGCGGGGCCGCTACCTCCGATATTCGGAGTTCCCTACTCTTCTCCTCCACCACCTCCCTTTTACTAA 2271 48.79 MKNILNFSLFLFTFLLISTFICLVASDQTLHIVGHGILTDAEASYIKQRQLLYYRDEFNDRGEEITIDPSLVFENERIKNAYIALQAWKLAILSDPQNQTTNWVGSDVCNYKGVYCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLADLALFHINSNRFCGTVPRKFEKLKLLYELDLSNNRFAGKFPDVVLELPTLKFLDLRFNEFEGSVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCLPSGLGNMTRLNEIILMNNEISSCLPPEIGSLKNLTVFDVSSNGLLGPLPETFGGLVSLEQLNVANNFLTGKIPESICELPKLENFTFSNNFFTGEPPACLRKVKESNDKRNCLPGRPVQRPSGQCKAFLSKPVDCNAFRCSSSSTPPELPVPLPGHSPPTGNIPPSIPTPTFSPPPAAQPPTHSQPSAPPLFHSPPTGNIPPAPVSPNFPPLPPQSPTTPIPTPTFSPPQTSPPTHSPPSLPPLVHSPPLPPSVQPPSPLPSTPSTPTTPTSPALPPSSPPQDHRPPAPPSAAVPSPPSPPQVYRPPAPPSAAVPSPPSPPQVYRPPAPPSAAVPTPPSPSQVYPPPAPPSSSVPAPPSPPSQSYPPLKPPSAPPLPMYSPPPPLFPTFPSPPSSQTPPYCIKPPTPSYSPNPPINHHASPPPPHFQSPPSLPSPLPLPCIEPPPPPPVPCENPPPSPSPPPPSPPPPPPPTPIYAGPLPPIFGVPYSSPPPPPFY 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44314220 44316490 + evm.model.ptg000008l.766 HCH8g0769 549867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0769 756 Gene3D Ribonuclease Inhibitor 81 373 IPR032675 -
HCH8g0769 756 Pfam Leucine rich repeat N-terminal domain 84 116 IPR013210 -
HCH8g0769 756 SUPERFAMILY L domain-like 90 358 - -
HCH8g0769 756 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 755 IPR051582 -
HCH8g0769 756 Pfam Leucine Rich Repeat 176 193 IPR001611 GO:0005515(InterPro)
HCH8g0769 756 FunFam Leucine-rich repeat extensin-like protein 1 82 243 - -
HCH8g0769 756 PRINTS Proline rich extensin signature 454 471 - -
HCH8g0769 756 PRINTS Proline rich extensin signature 473 498 - -
HCH8g0769 756 PRINTS Proline rich extensin signature 434 450 - -
HCH8g0769 756 PRINTS Proline rich extensin signature 407 428 - -
HCH8g0769 756 MobiDBLite consensus disorder prediction 407 735 - -
HCH8g0769 756 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 285 367 - -
HCH8g0769 756 MobiDBLite consensus disorder prediction 401 735 - -
HCH8g0769 756 Pfam Leucine rich repeat 293 350 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1246 HCH-Chr7:45311020 HCH8g0769 HCH-Chr8:44314220 1.70E-06 dispersed
HCH8g0687 HCH-Chr8:43616614 HCH8g0769 HCH-Chr8:44314220 2.20E-17 dispersed
HCH13g1116 HCH-Chr13:36805619 HCH8g0769 HCH-Chr8:44314220 5.90E-45 transposed
HCH10g0457 HCH-Chr10:3725504 HCH8g0769 HCH-Chr8:44314220 2.20E-74 wgd
HCH12g0330 HCH-Chr12:1904102 HCH8g0769 HCH-Chr8:44314220 1.30E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0769 - - - 0.0