Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0788 ATGGCACTCAAAAATTCCGTTTTCGTTTTCGTTTTCTTACTCTCACTCATTATCCTTCTTCAACAATCCCATTCCGAGCTTTCCACCGACAAACAATCTCTCCTCAATTTTCTCAACCAAACCCCTCACGCTAACCGTCTTTCATGGAACGTTTCCACTTCCCCTTGCCGTTGGGTCGGTGTCGTCTGTGATGTTAACGAGTCTTACGTTTTCGCTTTACGCTTACCCGCCGTCGGTCTCGTCGGTCCCATTCCCAGTAACTCTCTTGGCCGCTTGAACCGCCTCCGTGTCTTGAGTCTCCGCTCTAACCGAATCTCTGGGAACTTGCCTTCTGATTTTTCTAACTTGGGTTTCCTTCGTAGTCTTTATCTTCAAGATAATGATCTCTCCGGTGATTTCCCGGTCAGTTTGACTCAGTTGACTCGCTTGACCCGCCTTGATCTTTCTTCTAATAACTTCTCCGGTCCGATCCCTTTTTCCGTTAATAATCTGACCGGACTCACCGGACTTTTGCTTCAAAATAATCAATTTTCCGGTTCCATTCCAAGTATTGTAATTTCCAATTTAACAACTTTCAATGTCTCTAACAATAACCTCAATGGGTCAATCCCAGATTCATTATCGAAATTCCCCCGCTCCTCCTTCGCCGGAAATTTACAGCTTTGCGGCGGCCCATTACCGCCATGCACTCGTCCCTTCTTCCCTTCCCCTGCCCCATCTCCCTCTCCAATTCCCACTTCGCCCCCACCAATCCCAACGTCGAAAAACTCCAAACGCCTCTCCACTGCGGCGATAATCGGGATCGTAATCGGTTCAGCTTTCGTAGCTTTTCTACTCCTCGTATGCCTCTTACTCTTCTTGAGAAAGCGTGGGAGGAATAGACAAGCAGCGAAGCCACCGATATCAGTGGCGACGGCTCGATCGGCTGCGGCGGAAGCGGGGACGTCGTCGTCGAAAGACGACATAACGGGAGGGTCCGTGGAGGTGGAGGAGAAGAACAAATTGGTGTTTATTGAAGGCGGGGTTTATAGATTTGATTTGGAGGATTTGTTGAGAGCTTCGGCGGAGGTATTGGGGAAAGGGAGCGTGGGGACGTCGTACAAGGCGGTATTGGAAGAAGGGATTACGGTGGTCGTGAAGAGATTGAAAGATGTCGTCGTGAGTAAGAAGGAATTCGAGACGCAAATGGAGAGCGTTGGAAATGTGAGACATGAGAATGTGGTTCCTGTTAGAGCTTTTTATTATTCTGCAGATGAGAAATTGGTTGTTTTTGATTATTTGGTCGCCGGAAGCCTCTCTGCTTCACTTCACGGAAGTAGAGGATCAGGCCGTACACCACTCGAGTGGGACAGCCGGATAAAAATAGCATTAGCTACGGCAAAAGGCCTAGCTCACCTACACGTGTCCAGCAACCTGGTCCACGGCAACCTCAAATCTTCCAACGTCCTCCTCCACCCCAACCACGACGCCGCCGTCTCCGATTTCGGTCTCAACCCACTCTTCGGCACCACCACGCCGCCTAATCGCATCGCCGGATACCGGGCACCGGAAGTCATGGAAACCCGAAAAGTGACTTTCAAATCCGACGTGTACAGTTTCGGCGTTTTGGTTTTGGAACTGTTGACCGGGAAATCACCAAACCAAGCTTCGTTGGGAGAGGAAGGAATTGACCTTCCGAGATGGGTTCAGTCGGTGGTCCGGGAAGAATGGACGGCGGAGGTTTTTGACGTGGAATTGATGAGATATCATAATATCGAAGAGGAAATGGTTCAGTTGTTGCAAATTGCTATGGCGTGTGTCGCCGCCGTGCCGGATCAGAGACCGTCGATGCAAGAGGTGGTTCGGATGATTGAGGATTTGAATAGAGGGGAAACCGACGACGGTTTACGACAGTCGTCCGATGATCCTTCGAAAGGATCAGAGGGTCAAACTCCTCCTAGAATTGTTGCACCTTAA 1956 49.69 MALKNSVFVFVFLLSLIILLQQSHSELSTDKQSLLNFLNQTPHANRLSWNVSTSPCRWVGVVCDVNESYVFALRLPAVGLVGPIPSNSLGRLNRLRVLSLRSNRISGNLPSDFSNLGFLRSLYLQDNDLSGDFPVSLTQLTRLTRLDLSSNNFSGPIPFSVNNLTGLTGLLLQNNQFSGSIPSIVISNLTTFNVSNNNLNGSIPDSLSKFPRSSFAGNLQLCGGPLPPCTRPFFPSPAPSPSPIPTSPPPIPTSKNSKRLSTAAIIGIVIGSAFVAFLLLVCLLLFLRKRGRNRQAAKPPISVATARSAAAEAGTSSSKDDITGGSVEVEEKNKLVFIEGGVYRFDLEDLLRASAEVLGKGSVGTSYKAVLEEGITVVVKRLKDVVVSKKEFETQMESVGNVRHENVVPVRAFYYSADEKLVVFDYLVAGSLSASLHGSRGSGRTPLEWDSRIKIALATAKGLAHLHVSSNLVHGNLKSSNVLLHPNHDAAVSDFGLNPLFGTTTPPNRIAGYRAPEVMETRKVTFKSDVYSFGVLVLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVAAVPDQRPSMQEVVRMIEDLNRGETDDGLRQSSDDPSKGSEGQTPPRIVAP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44481990 44484701 + evm.model.ptg000008l.747 HCH8g0788 549886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0788 651 Gene3D Phosphorylase Kinase; domain 1 320 426 - -
HCH8g0788 651 Pfam Protein tyrosine and serine/threonine kinase 356 616 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0788 651 MobiDBLite consensus disorder prediction 619 651 - -
HCH8g0788 651 MobiDBLite consensus disorder prediction 232 256 - -
HCH8g0788 651 FunFam pollen receptor-like kinase 1 322 426 - -
HCH8g0788 651 SUPERFAMILY Protein kinase-like (PK-like) 356 617 IPR011009 -
HCH8g0788 651 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
HCH8g0788 651 PANTHER OS05G0588300 PROTEIN 9 627 IPR050994 -
HCH8g0788 651 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515(InterPro)
HCH8g0788 651 SUPERFAMILY L domain-like 30 210 - -
HCH8g0788 651 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
HCH8g0788 651 Gene3D Transferase(Phosphotransferase) domain 1 428 638 - -
HCH8g0788 651 ProSiteProfiles Protein kinase domain profile. 352 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0788 651 MobiDBLite consensus disorder prediction 619 634 - -
HCH8g0788 651 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 427 631 - -
HCH8g0788 651 MobiDBLite consensus disorder prediction 232 252 - -
HCH8g0788 651 FunFam Probable inactive receptor kinase RLK902 27 185 - -
HCH8g0788 651 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
HCH8g0788 651 Gene3D Ribonuclease Inhibitor 185 232 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0752 HCH-Chr1:56335050 HCH8g0788 HCH-Chr8:44481990 1.00E-99 dispersed
HCH3g0220 HCH-Chr3:1405698 HCH8g0788 HCH-Chr8:44481990 8.30E-118 dispersed
HCH4g0623 HCH-Chr4:4077127 HCH8g0788 HCH-Chr8:44481990 3.80E-67 dispersed
HCH6g0004 HCH-Chr6:328906 HCH8g0788 HCH-Chr8:44481990 4.80E-65 dispersed
HCH8g0788 HCH-Chr8:44481990 HCH9g0846 HCH-Chr9:5984425 4.40E-132 dispersed
HCH13g0802 HCH-Chr13:7743305 HCH8g0788 HCH-Chr8:44481990 5.40E-63 transposed
HCH10g0445 HCH-Chr10:3554421 HCH8g0788 HCH-Chr8:44481990 2.90E-200 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81703 PF00069 Pkinase 3.70E-35 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0788 - - - 0.0