Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0792 ATGGCATCGACAGAATTGAGCTTAGAATGCAAAGTTCAAAGCTATTCAATGCTTCTGAAATATAATTCCTTTGGAGACGGCCAGCCTCTGCTGCCGGCAGCTGACCCGACGTATTATAAGCTTCAAGACTTCGTCTCTCGCCTTGAGGAAGAACGCCTGAAAATCGACGTATTCAAGCGGGAGCTTCCACTTTGCATGGAGCTTTTAACCAACGCTGTAGAGACTTCGAGGAGGCAGCTACAAGCCTGCAAGACAATTCAAGGTGGGCAGCAAAAATTACCAGTTCTTGAAGAGTTCATACCCCTCAAGAATTCAACGCCGCCTGAAGATCAAAAGCCACTCGCCGTCTCCGATAAGGCAAACTGGATGACATCTGTTCAGCTATGGAGTCAAGCAAGCGACGTAACCAAACAACCACATTCTACAATACTCAATGAATCTCCAAAAGAAGAGTTTAATAATAATAATGGGGGAGGTTTCCACCCCTTCAACAAAGATCATCAGCGGAACTCCAGCCAAGGTTTCGGTCTCGATGCCGAGAAAGCGGCCGTGGCGGAAATGGAGTTGTTCGAGAAAGCTGAGGATAATAAGAGTGGAAGTTGCGATGGAGAAGTGGTGGCGATGGAGCAAAGAGCTGAAAATGTTGAGACGGCGGAGCTGGGATCAGTGCAAACGACGGCTTCCACTTCCAACACCACGACTCAGACTAACCGGAAGGCTAGACGATGCTGGTCGCCAGACTTGCACCGGAGATTTGTCAATGCCCTTCAAATGCTAGGGGGTTCTCAAGTTGCCACCCCAAAGCAGATAAGAGAGTTGATGAAAGTAGAAGGCTTGACAAACGATGAAGTAAAAAGCCATCTGCAGAAATACAGGCTTCATACAAGACGACCAGGTCCAAACCCACAACAACCTGGGCCCCACTCACCCCATCTTGTCGTACTTGGTGTCGGCGGAATCTGGGTTCCAACGGAGTACGCGGCGGCGGCGTCTCAGAATGGGACACCCGCCGTGTACGGCCCATCTTCCCACTTCTACACCACACCATCTCCACTACTGCCGCAAGAGTTTTATACAGCAACTCCACCGCCGCATCCACAGCCTTCGTTCCCACATCCTTTCCATTTATACAAGAAGACAACAGAAAGCTCGCCGGAATCAGATATGAAGGAGAGGGGGGAGCGGGAGCGGGAGCGGGAGCGGTCGGAGAGTTTTGAGGAGGATAAGTCAGGAAGTAATACTAATATTAGCTGTGGTGGAAACGGCGATGAGAGAATTGGGAAAGGATTGTGTGGGGGGATCAGAATGGAAGGATGTGAAGAAAGTAATAGGAGAGAGATTAGTTTGAGATTCTAG 1356 49.48 MASTELSLECKVQSYSMLLKYNSFGDGQPLLPAADPTYYKLQDFVSRLEEERLKIDVFKRELPLCMELLTNAVETSRRQLQACKTIQGGQQKLPVLEEFIPLKNSTPPEDQKPLAVSDKANWMTSVQLWSQASDVTKQPHSTILNESPKEEFNNNNGGGFHPFNKDHQRNSSQGFGLDAEKAAVAEMELFEKAEDNKSGSCDGEVVAMEQRAENVETAELGSVQTTASTSNTTTQTNRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLHTRRPGPNPQQPGPHSPHLVVLGVGGIWVPTEYAAAASQNGTPAVYGPSSHFYTTPSPLLPQEFYTATPPPHPQPSFPHPFHLYKKTTESSPESDMKERGERERERERSESFEEDKSGSNTNISCGGNGDERIGKGLCGGIRMEGCEESNRREISLRF 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44509262 44511782 + evm.model.ptg000008l.743 HCH8g0792 549890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0792 451 SUPERFAMILY Homeodomain-like 237 297 IPR009057 -
HCH8g0792 451 FunFam Myb family transcription factor 238 296 - -
HCH8g0792 451 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 37 395 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0792 451 Pfam Myb-like DNA-binding domain 241 292 IPR001005 -
HCH8g0792 451 NCBIfam myb-like DNA-binding domain, SHAQKYF class 239 294 IPR006447 GO:0003677(InterPro)
HCH8g0792 451 MobiDBLite consensus disorder prediction 362 436 - -
HCH8g0792 451 Gene3D - 238 296 - -
HCH8g0792 451 MobiDBLite consensus disorder prediction 221 241 - -
HCH8g0792 451 MobiDBLite consensus disorder prediction 379 408 - -
HCH8g0792 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 296 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0792 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1250 HCH-Chr10:44411445 HCH8g0792 HCH-Chr8:44509262 3.80E-43 dispersed
HCH14g0258 HCH-Chr14:30424535 HCH8g0792 HCH-Chr8:44509262 5.40E-34 dispersed
HCH1g0801 HCH-Chr1:56695900 HCH8g0792 HCH-Chr8:44509262 3.80E-43 dispersed
HCH2g0397 HCH-Chr2:46916532 HCH8g0792 HCH-Chr8:44509262 7.00E-45 dispersed
HCH7g0622 HCH-Chr7:6039631 HCH8g0792 HCH-Chr8:44509262 3.10E-40 dispersed
HCH8g0792 HCH-Chr8:44509262 HCH9g1420 HCH-Chr9:46720663 1.60E-11 dispersed
HCH10g0443 HCH-Chr10:3533464 HCH8g0792 HCH-Chr8:44509262 3.20E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002001 2 1 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34028 PF00249 Myb_DNA-binding 9.30E-06 CL0123 HCH TF