Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0792 ATGGCATCGACAGAATTGAGCTTAGAATGCAAAGTTCAAAGCTATTCAATGCTTCTGAAATATAATTCCTTTGGAGACGGCCAGCCTCTGCTGCCGGCAGCTGACCCGACGTATTATAAGCTTCAAGACTTCGTCTCTCGCCTTGAGGAAGAACGCCTGAAAATCGACGTATTCAAGCGGGAGCTTCCACTTTGCATGGAGCTTTTAACCAACGCTGTAGAGACTTCGAGGAGGCAGCTACAAGCCTGCAAGACAATTCAAGGTGGGCAGCAAAAATTACCAGTTCTTGAAGAGTTCATACCCCTCAAGAATTCAACGCCGCCTGAAGATCAAAAGCCACTCGCCGTCTCCGATAAGGCAAACTGGATGACATCTGTTCAGCTATGGAGTCAAGCAAGCGACGTAACCAAACAACCACATTCTACAATACTCAATGAATCTCCAAAAGAAGAGTTTAATAATAATAATGGGGGAGGTTTCCACCCCTTCAACAAAGATCATCAGCGGAACTCCAGCCAAGGTTTCGGTCTCGATGCCGAGAAAGCGGCCGTGGCGGAAATGGAGTTGTTCGAGAAAGCTGAGGATAATAAGAGTGGAAGTTGCGATGGAGAAGTGGTGGCGATGGAGCAAAGAGCTGAAAATGTTGAGACGGCGGAGCTGGGATCAGTGCAAACGACGGCTTCCACTTCCAACACCACGACTCAGACTAACCGGAAGGCTAGACGATGCTGGTCGCCAGACTTGCACCGGAGATTTGTCAATGCCCTTCAAATGCTAGGGGGTTCTCAAGTTGCCACCCCAAAGCAGATAAGAGAGTTGATGAAAGTAGAAGGCTTGACAAACGATGAAGTAAAAAGCCATCTGCAGAAATACAGGCTTCATACAAGACGACCAGGTCCAAACCCACAACAACCTGGGCCCCACTCACCCCATCTTGTCGTACTTGGTGTCGGCGGAATCTGGGTTCCAACGGAGTACGCGGCGGCGGCGTCTCAGAATGGGACACCCGCCGTGTACGGCCCATCTTCCCACTTCTACACCACACCATCTCCACTACTGCCGCAAGAGTTTTATACAGCAACTCCACCGCCGCATCCACAGCCTTCGTTCCCACATCCTTTCCATTTATACAAGAAGACAACAGAAAGCTCGCCGGAATCAGATATGAAGGAGAGGGGGGAGCGGGAGCGGGAGCGGGAGCGGTCGGAGAGTTTTGAGGAGGATAAGTCAGGAAGTAATACTAATATTAGCTGTGGTGGAAACGGCGATGAGAGAATTGGGAAAGGATTGTGTGGGGGGATCAGAATGGAAGGATGTGAAGAAAGTAATAGGAGAGAGATTAGTTTGAGATTCTAG 1356 49.48 MASTELSLECKVQSYSMLLKYNSFGDGQPLLPAADPTYYKLQDFVSRLEEERLKIDVFKRELPLCMELLTNAVETSRRQLQACKTIQGGQQKLPVLEEFIPLKNSTPPEDQKPLAVSDKANWMTSVQLWSQASDVTKQPHSTILNESPKEEFNNNNGGGFHPFNKDHQRNSSQGFGLDAEKAAVAEMELFEKAEDNKSGSCDGEVVAMEQRAENVETAELGSVQTTASTSNTTTQTNRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLHTRRPGPNPQQPGPHSPHLVVLGVGGIWVPTEYAAAASQNGTPAVYGPSSHFYTTPSPLLPQEFYTATPPPHPQPSFPHPFHLYKKTTESSPESDMKERGERERERERSESFEEDKSGSNTNISCGGNGDERIGKGLCGGIRMEGCEESNRREISLRF 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44509262 44511782 + evm.model.ptg000008l.743 HCH8g0792 549890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0792 451 SUPERFAMILY Homeodomain-like 237 297 IPR009057 -
HCH8g0792 451 FunFam Myb family transcription factor 238 296 - -
HCH8g0792 451 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 37 395 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0792 451 Pfam Myb-like DNA-binding domain 241 292 IPR001005 -
HCH8g0792 451 NCBIfam myb-like DNA-binding domain, SHAQKYF class 239 294 IPR006447 GO:0003677(InterPro)
HCH8g0792 451 MobiDBLite consensus disorder prediction 362 436 - -
HCH8g0792 451 Gene3D - 238 296 - -
HCH8g0792 451 MobiDBLite consensus disorder prediction 221 241 - -
HCH8g0792 451 MobiDBLite consensus disorder prediction 379 408 - -
HCH8g0792 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 296 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1250 HCH-Chr10:44411445 HCH8g0792 HCH-Chr8:44509262 3.80E-43 dispersed
HCH14g0258 HCH-Chr14:30424535 HCH8g0792 HCH-Chr8:44509262 5.40E-34 dispersed
HCH1g0801 HCH-Chr1:56695900 HCH8g0792 HCH-Chr8:44509262 3.80E-43 dispersed
HCH2g0397 HCH-Chr2:46916532 HCH8g0792 HCH-Chr8:44509262 7.00E-45 dispersed
HCH7g0622 HCH-Chr7:6039631 HCH8g0792 HCH-Chr8:44509262 3.10E-40 dispersed
HCH8g0792 HCH-Chr8:44509262 HCH9g1420 HCH-Chr9:46720663 1.60E-11 dispersed
HCH10g0443 HCH-Chr10:3533464 HCH8g0792 HCH-Chr8:44509262 3.20E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34028 PF00249 Myb_DNA-binding 9.30E-06 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0792 - - - 0.0