Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0793 ATGCCACTCATGCAAATGGAGCCAGAAGAGAAACATATGATTCAGACTAGTTTATGGAAGAGAAAAGGAAAGAGGAGAGGGAAAGGACCTGCAACAATGGAGGAGAAAGGGCTTGATTCAAATCTAGAGTTTCCTTCTTCATCATCCTGCAAAACCATAACCTTTCCTTCTAGACCTGACTTTGGACAACTTGGTACTAAATGCTTGATCAAAGCCAATCACTTCCTTGCAAAAATACCTGATTCAGACATAAGTCATTACAATGTTAAGATAACCCCTGAAGTTACTTCTCTTAAAATGAAGAAAAATATAATGAGTGAGTTGGTGAGAAGTTATAGAAGCACAGAGTTGGGGACGAGACTGCCAGTTTTTGATGGAGGAAGAAATCTATACACTGCTGGATTGCTCCCTTTCACATCCAAAGAGTTTACTGTCATTTTGGCTGTTGCTGAGGAGGGCTCCGGGACCCCTAGGGAAAGGGAATTCAAAGTTCTGATAAAGTTTGTAACTTTAGCTAGCATGCACCAGTTAAGAGAGTTAGTGTCTGGTAAACAAGTTAATAACCCTCAAGAGGCATTGACCATTATTGATATAGTCTTGAAGGAGCTTCATGCCCAAAGATATATATCAGTTGGGAGATTCTTTTATTCTCCTTGCTTAAAGAAACCGCAGCATGTGGGGAACGGTTTACAAGCGTGGCGTGGCTTCTATCAGAGCATTAGACCTACACAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTTGCTCAAATTTTGAACAAAGATGTGTATTCAAGGCCATTGTCTGATGCTGATAGAATTAAGGTTAAGAAAGTACTTAGAGGTGTCAAAGTTGAAGTAACGCATAGAGGAAACGTACGAAGGAAATATCGAATTTCGGGGTTGACATCACAACCTACAAGGGAGCTAATTTTTCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAGTACTTCCAAGAGGTGTATGGATTTACCATTCAGTATCCACATTTACCTTGCCTTCAAGTAGGAAACCAGAAGAAAGTGAATTATCTTCCCATGGAGGCATGTAAGATACTCAAAGGACAGAGATACACAAAAGGACTGAATGAAAAGCAAATAACTTCATTGTTGAAGATTTCATGTCAAAGACCATGTGACCAAGAAATGGATATTTTACAGACTGTTCATCAGAATGCATACGAGGAAGATCCATATGCTAAAGAGTTCGGTATCAGCATTGACGACAAGCTTGCATCAGTTGAAGCTCGAGTCCTTCCATCTCCATGGCTAAAATTCCATGATACTGGGAAAGAAAAGGAGCATCTGCCTCAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTAATAAATGGAAGTGTTGTAAGATATTGGGCTTGTATCAATTTCTCACGCAGCGTCCAAGAGAGCATAGGTCGTGGTTTTTGTCAACAGCTTGTCCAGATGTGCCAAATCTCTGGCATGGAATTCAACCCAGATCCTGCAATTCCTATATACTCAGCCAGACCAGATCAAGTGAAGAAGGCCTTAAAATATGTATATAATGCAGTTTATAACAAACATGAAGGGAAAGAGTTAGAGTTACTTATTGCTATTCTTCCTGACAGCAATGGCTCTTTATATGGTGATCTTAAAAGGATTTGTGAAACAGAGTTGGGATTGATCTCTCAGTGCTGCCTAACAAAGCATGTCTTCAAGAAGAGCAGACAGTACTTGGCGAATGTATCGCTTAAAATCAATGTCAAGATGGGTGGAAGAAATACAGTTCTTTTAGATGCTTTGCGGTCAAGAATTCCGCTGGTCAGTGACATTCCGACAATAATTTTTGGAGCTGATGTTACCCATCCAGAATCTGGAGAGGATTCTTTCCCATCAATAGCTGCTGTTGTGGCCTCCCAAGATTGGCCAGAAGTTACGAAATATGCTGGATTAGTATGCGCTCAGCCTCACCGGGAAGAATTGATTCAAGATTTATTCAAAACCTGGAAAGATCCTCACCGGGGCACGGTTGCTGGTGGTATGATAAGAGAGCTCTTGCTTTCATTTAAGAAGGCCACTGGACAAAAACCATTAAGGATAATATTTTACAGGGATGGTGTGAGTGAGGGTCAGTTCTACCAGGTTCTGCTGCATGAACTCGACGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCTGTAACCTTTATTGTCGTCCAAAAGCGACACCACACCAGACTTTTTGCATCCAATCACAATGATAGAAGCAGCACTGACAAGAGTGGTAATATTTTACCAGGAACTGTCGTAGATTCAAAGATATGTCACCCCACCGAGTTCGATTTCTATCTATGCAGTCATGCAGGAATCCAGGGAACAAGTCGCCCTGCACATTATCATGTTCTCTGGGATGAAAACAATTTCAGTGCAGATGAGATTCAATCTCTGACTAATAATCTCTGCTACACGTATGCTCGGTGCACGAGATCTGTCTCAGTAGTTCCTCCAGCATACTACGCTCATCTAGCGGCTTACAGAGCTCGATTCTACGTCGAACCGGACGCTCATGAGAATGCCAAGAGGTGCTGCACTCGCACCACAAATGGAACCTGTGTCCGGCCTCTGCCTGCACTGAAAGAAAGAGTTAAAAATGTAATGTTCTATTGTTGA 2727 41.62 MPLMQMEPEEKHMIQTSLWKRKGKRRGKGPATMEEKGLDSNLEFPSSSSCKTITFPSRPDFGQLGTKCLIKANHFLAKIPDSDISHYNVKITPEVTSLKMKKNIMSELVRSYRSTELGTRLPVFDGGRNLYTAGLLPFTSKEFTVILAVAEEGSGTPREREFKVLIKFVTLASMHQLRELVSGKQVNNPQEALTIIDIVLKELHAQRYISVGRFFYSPCLKKPQHVGNGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRPLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEVYGFTIQYPHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLKISCQRPCDQEMDILQTVHQNAYEEDPYAKEFGISIDDKLASVEARVLPSPWLKFHDTGKEKEHLPQVGQWNMMNKKVINGSVVRYWACINFSRSVQESIGRGFCQQLVQMCQISGMEFNPDPAIPIYSARPDQVKKALKYVYNAVYNKHEGKELELLIAILPDSNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSFPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIVVQKRHHTRLFASNHNDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAHENAKRCCTRTTNGTCVRPLPALKERVKNVMFYC 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44526241 44531469 + evm.model.ptg000008l.742 HCH8g0793 549891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0793 908 FunFam Protein argonaute-2 255 381 - -
HCH8g0793 908 SMART Piwi_a_2 550 871 IPR003165 GO:0003676(InterPro)
HCH8g0793 908 ProSiteProfiles Piwi domain profile. 550 871 IPR003165 GO:0003676(InterPro)
HCH8g0793 908 SMART DUF1785_2 209 261 IPR014811 -
HCH8g0793 908 Pfam Argonaute linker 1 domain 210 260 IPR014811 -
HCH8g0793 908 SUPERFAMILY Ribonuclease H-like 541 872 IPR012337 -
HCH8g0793 908 ProSiteProfiles PAZ domain profile. 263 376 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH8g0793 908 Pfam PAZ domain 266 392 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH8g0793 908 CDD PAZ_argonaute_like 261 375 - -
HCH8g0793 908 Pfam Piwi domain 551 869 IPR003165 GO:0003676(InterPro)
HCH8g0793 908 CDD Piwi_ago-like 420 869 IPR045246 -
HCH8g0793 908 SMART PAZ_2_a_3 266 398 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH8g0793 908 Gene3D - 619 908 IPR036397 GO:0003676(InterPro)
HCH8g0793 908 MobiDBLite consensus disorder prediction 19 41 - -
HCH8g0793 908 FunFam Argonaute 10 440 613 - -
HCH8g0793 908 Gene3D - 440 613 - -
HCH8g0793 908 Pfam Mid domain of argonaute 459 536 IPR032473 -
HCH8g0793 908 Pfam Argonaute linker 2 domain 405 448 IPR032472 -
HCH8g0793 908 Gene3D paz domain 255 380 - -
HCH8g0793 908 Pfam N-terminal domain of argonaute 67 200 IPR032474 -
HCH8g0793 908 FunFam protein argonaute 10-like 619 908 - -
HCH8g0793 908 SUPERFAMILY PAZ domain 256 416 IPR036085 GO:0005515(InterPro)
HCH8g0793 908 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 58 877 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1262 HCH-Chr7:45486412 HCH8g0793 HCH-Chr8:44526241 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0793 K11593 - csv:101213206 1669.06