Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0800 | ATGGAAGGCGTGAGAAACAGAGGAGTTTTCAGGGTTTCCGTTTGTGGTCAAGAAGAAACAGAACAGATATCAAGAGACGGTAGTCAATACAGCCTCACCACTGGAATATTACCCTCTCTTGGCGCCCGAAGTAACCGCCGTGTCAAACTCCGTCGTTTCATCATCTCCCCCTACGACCGCCGTTACCGGTTTTGGCAGACATTTCTTGTTGTTTTGGTGGTATATACTGCTTGGGTTTCGCCTTTCGAATTCGGGTTTCTTAAGAAACCAGAAGGACCACTTTCCATTACAGACAATGTGGTTAATGGATTCTTTGCTGTGGATATTATTCTCACTTTCTTTGTAGCGTACTTGGACAAAACCAGTTATTTACTTGTTGATAACCCAAAGAAGATTGCTTTGAAATATGCAACTTCTTGGCTTGTTCTCGATGTTATATCGACAATTCCCTCTGAACTCGCTCGCAAGATTTCCCCTTCGCCTCTTAGTTCTTATGGATTATTCAATATGCTTCGGTTATGGCGTCTTCGACGAGTTAGTGCTCTCTTTTCTAGATTGGAAAAGGATCGGAAATATAACTATTTTTGGGTTCGATGTGCGAAACTCCTATGTGTTACTCTCTTTGCTGTCCATTGTGCCGCGTGCTTCTATTATCTCATTGCTGCTCGTTATCATGACCCAAAAAGGACATGGATCGGAGCATCTATGGAAAACTTTCTTGAACAAAGTTTGTGGATAAGATATATCACTGCTATTTATTGGTCAATTACGACTCTAACTACTGTCGGTTATGGAGACTTGCATCCTGTGAATACAAGGGAGATGATTTTCGACATCTTTTACATGCTTTTCAATCTTGGTTTGACAGCATATTTGATTGGAAATATGACCAACTTAGTTGTACATGGGACCAGTAGAACTAGAAAATTTAGGGATACTATACAAGCAGCCTCTAGTTTTGCCAACAGGAATCAACTTCCTCTCCGCTTGCAAGATCAAATGCTTGCACATTTGTGCTTAAAGTTTAGAACAGACTCTGAAGGATTGCAGCAACAAGAAACTCTTGATTCCCTTCCGAAGGCGATCAGATCAAGCATTTCACATTATCTTTTCTATTCTTTAGTAGATAAGGTCTACTTGTTTCGTGGTGTTTCAAACGACTTACTTTTTCAACTGGTTTCAGAGATGAAGGCAGAGTATTTCCCCCCAAAAGAAGACGTGATTTTGCAAAATGAAGCCCCAACAGATTTCTACATTCTTGTCACTGGTGCTGTGGATTTGCTGGTTCTCAAAAATGGAGTTGAACAGGTTATCGGAGAGGCGAATACTGGTGATCTTTGTGGTGAGGTTGGGGTGCTTTGCTATAGGCCACAGCTCTTTACGGTGCGTACTAAGCGATTGAGTCAGCTGCTGCGTTTGAACCGTACTGCTTTCCTGAACATTGTCCAGTCCAATGTCGGTGATGGGACCATAATTATGAACAATCTTCTTCAGCGCTTGAAAGACCTCAAAGACAAAGACCCCATTATGGAAGGTGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGTTTTGCAACACTTAGGGGGGATGATTTGCTTTTGCACCAGCTGTTGAAACGAGGTCTGGACCCGAATGAATCCGACAATAATGGGAGGACTGCACTCCATATTGCAGCCTCTAAAGGAAATGAGAATTGTGTGCTTCTTTTACTGGACTATGGAGCAGATCCCAATAGTAGAGATTCAGATGGGAATGGGCCATTATGGGAAGCAATACTAGGCGGCCATGAGCCCGTAGTCCAGCTACTTGTCGACAATGGTGCTAATTTGCGATCGGGAGAAATGGGACATTTTGCATGCACTGCTGCAGAGCAAAACAATCTCCAGTTGCTCAAGGAGATTCTCCGATATGGAGGAGATGTTACAAGTGCCAAGAACAATGGAAACACAGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATTGTCAAATTCCTTCTCAAACATGGAGCTGATGTTGATAAACCAGATGTCCATGGTTGGACTCCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATCAAATTCCTCTTCCAGACAACAAAAGAAGCAAGATCTCAATCTGTGGTCTCCATTCCTGAGACTGGAATTCGTTTGCTCGGAAGATTCACAAGCGAGCCTATGATTCGCCCTCTACTACAGGAAGCGAATGAAGGTTCATGGCCTAGTCAATCTCGTCCGAGGCGTAGGACGAATAATTTCCACAACTCATTGTTTGGGATTATGTCAGCAGCACATTCAGGTGAGAGAGATATTCTTTTCCCTGATAATCAAACCAGAGAAGAGAAGAGTTTTGAAATCAACCCTGCAAGAGTGGTGATTAGTTGTCCGGAGATTGGCGAAGTTGTAGGAAAGTTGGTGCTGCTTCCAGGAAGCTACAATGAGCTTCTTGAGGTTGGTGCGAAGAAATTCGGTTTCATGCCATCAAAGGTTTTGAACAAAGATGGAGTTGAGATTGAAGATATAGAGGTCATTAGAGATGGTGATCATCTTGTCTTTGTCAGTAATGATAGAACTCAAAATGTCTCCACATTGGAAGTTTAA | 2640 | 42.69 | MEGVRNRGVFRVSVCGQEETEQISRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRFWQTFLVVLVVYTAWVSPFEFGFLKKPEGPLSITDNVVNGFFAVDIILTFFVAYLDKTSYLLVDNPKKIALKYATSWLVLDVISTIPSELARKISPSPLSSYGLFNMLRLWRLRRVSALFSRLEKDRKYNYFWVRCAKLLCVTLFAVHCAACFYYLIAARYHDPKRTWIGASMENFLEQSLWIRYITAIYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFANRNQLPLRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVIGEANTGDLCGEVGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQRLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGNENCVLLLLDYGADPNSRDSDGNGPLWEAILGGHEPVVQLLVDNGANLRSGEMGHFACTAAEQNNLQLLKEILRYGGDVTSAKNNGNTALHVAVCEDNIEIVKFLLKHGADVDKPDVHGWTPRDLADQQGHEEIKFLFQTTKEARSQSVVSIPETGIRLLGRFTSEPMIRPLLQEANEGSWPSQSRPRRRTNNFHNSLFGIMSAAHSGERDILFPDNQTREEKSFEINPARVVISCPEIGEVVGKLVLLPGSYNELLEVGAKKFGFMPSKVLNKDGVEIEDIEVIRDGDHLVFVSNDRTQNVSTLEV | 879 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 44580236 | 44586085 | - | evm.model.ptg000008l.735 | HCH8g0800 | 549898 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0800 | 879 | Gene3D | - | 528 | 711 | IPR036770 | - | |
HCH8g0800 | 879 | SMART | cnmp_10 | 380 | 497 | IPR000595 | - | |
HCH8g0800 | 879 | SUPERFAMILY | cAMP-binding domain-like | 305 | 500 | IPR018490 | - | |
HCH8g0800 | 879 | Gene3D | - | 63 | 301 | - | - | |
HCH8g0800 | 879 | PRINTS | EAG/ELK/ERG potassium channel family signature | 274 | 285 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH8g0800 | 879 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH8g0800 | 879 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH8g0800 | 879 | PRINTS | EAG/ELK/ERG potassium channel family signature | 292 | 301 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH8g0800 | 879 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH8g0800 | 879 | PRINTS | EAG/ELK/ERG potassium channel family signature | 248 | 265 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH8g0800 | 879 | ProSiteProfiles | Ankyrin repeat profile. | 657 | 689 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | PANTHER | POTASSIUM CHANNEL AKT1 | 22 | 864 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
HCH8g0800 | 879 | SMART | ANK_2a | 593 | 622 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | SMART | ANK_2a | 560 | 589 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | SMART | ANK_2a | 527 | 556 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | SMART | ANK_2a | 624 | 653 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | SMART | ANK_2a | 657 | 686 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | ProSiteProfiles | Ankyrin repeat region circular profile. | 560 | 591 | - | - | |
HCH8g0800 | 879 | ProSiteProfiles | Ankyrin repeat profile. | 593 | 625 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | ProSiteProfiles | Ankyrin repeat region circular profile. | 657 | 688 | - | - | |
HCH8g0800 | 879 | Gene3D | Jelly Rolls | 344 | 506 | IPR014710 | - | |
HCH8g0800 | 879 | ProSiteProfiles | Ankyrin repeat region circular profile. | 593 | 620 | - | - | |
HCH8g0800 | 879 | ProSiteProfiles | KHA domain profile. | 803 | 879 | IPR021789 | - | |
HCH8g0800 | 879 | Pfam | Ion transport protein | 62 | 307 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH8g0800 | 879 | Pfam | Cyclic nucleotide-binding domain | 399 | 485 | IPR000595 | - | |
HCH8g0800 | 879 | CDD | CAP_ED | 380 | 485 | IPR000595 | - | |
HCH8g0800 | 879 | PRINTS | Ankyrin repeat signature | 561 | 576 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | PRINTS | Ankyrin repeat signature | 673 | 687 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | ProSiteProfiles | Ankyrin repeat profile. | 560 | 592 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | FunFam | Potassium channel KAT2 | 368 | 504 | - | - | |
HCH8g0800 | 879 | Pfam | Ankyrin repeats (3 copies) | 631 | 710 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | Pfam | Ankyrin repeats (3 copies) | 532 | 620 | IPR002110 | GO:0005515(InterPro) | |
HCH8g0800 | 879 | FunFam | Potassium channel SKOR | 63 | 301 | - | - | |
HCH8g0800 | 879 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 301 | - | - | |
HCH8g0800 | 879 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 499 | IPR000595 | - | |
HCH8g0800 | 879 | Pfam | KHA, dimerisation domain of potassium ion channel | 803 | 865 | IPR021789 | - | |
HCH8g0800 | 879 | SUPERFAMILY | Ankyrin repeat | 531 | 709 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1013 | HCH-Chr10:29122019 | HCH8g0800 | HCH-Chr8:44580236 | 7.80E-89 | transposed | |
HCH11g0848 | HCH-Chr11:39275228 | HCH8g0800 | HCH-Chr8:44580236 | 9.50E-135 | transposed | |
HCH12g0326 | HCH-Chr12:1876562 | HCH8g0800 | HCH-Chr8:44580236 | 6.30E-06 | transposed | |
HCH3g0767 | HCH-Chr3:5582232 | HCH8g0800 | HCH-Chr8:44580236 | 1.80E-09 | transposed | |
HCH12g0347 | HCH-Chr12:1988391 | HCH8g0800 | HCH-Chr8:44580236 | 8.70E-288 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g0800 | K21867 | - | csv:101220784 | 1559.27 |