Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0800 ATGGAAGGCGTGAGAAACAGAGGAGTTTTCAGGGTTTCCGTTTGTGGTCAAGAAGAAACAGAACAGATATCAAGAGACGGTAGTCAATACAGCCTCACCACTGGAATATTACCCTCTCTTGGCGCCCGAAGTAACCGCCGTGTCAAACTCCGTCGTTTCATCATCTCCCCCTACGACCGCCGTTACCGGTTTTGGCAGACATTTCTTGTTGTTTTGGTGGTATATACTGCTTGGGTTTCGCCTTTCGAATTCGGGTTTCTTAAGAAACCAGAAGGACCACTTTCCATTACAGACAATGTGGTTAATGGATTCTTTGCTGTGGATATTATTCTCACTTTCTTTGTAGCGTACTTGGACAAAACCAGTTATTTACTTGTTGATAACCCAAAGAAGATTGCTTTGAAATATGCAACTTCTTGGCTTGTTCTCGATGTTATATCGACAATTCCCTCTGAACTCGCTCGCAAGATTTCCCCTTCGCCTCTTAGTTCTTATGGATTATTCAATATGCTTCGGTTATGGCGTCTTCGACGAGTTAGTGCTCTCTTTTCTAGATTGGAAAAGGATCGGAAATATAACTATTTTTGGGTTCGATGTGCGAAACTCCTATGTGTTACTCTCTTTGCTGTCCATTGTGCCGCGTGCTTCTATTATCTCATTGCTGCTCGTTATCATGACCCAAAAAGGACATGGATCGGAGCATCTATGGAAAACTTTCTTGAACAAAGTTTGTGGATAAGATATATCACTGCTATTTATTGGTCAATTACGACTCTAACTACTGTCGGTTATGGAGACTTGCATCCTGTGAATACAAGGGAGATGATTTTCGACATCTTTTACATGCTTTTCAATCTTGGTTTGACAGCATATTTGATTGGAAATATGACCAACTTAGTTGTACATGGGACCAGTAGAACTAGAAAATTTAGGGATACTATACAAGCAGCCTCTAGTTTTGCCAACAGGAATCAACTTCCTCTCCGCTTGCAAGATCAAATGCTTGCACATTTGTGCTTAAAGTTTAGAACAGACTCTGAAGGATTGCAGCAACAAGAAACTCTTGATTCCCTTCCGAAGGCGATCAGATCAAGCATTTCACATTATCTTTTCTATTCTTTAGTAGATAAGGTCTACTTGTTTCGTGGTGTTTCAAACGACTTACTTTTTCAACTGGTTTCAGAGATGAAGGCAGAGTATTTCCCCCCAAAAGAAGACGTGATTTTGCAAAATGAAGCCCCAACAGATTTCTACATTCTTGTCACTGGTGCTGTGGATTTGCTGGTTCTCAAAAATGGAGTTGAACAGGTTATCGGAGAGGCGAATACTGGTGATCTTTGTGGTGAGGTTGGGGTGCTTTGCTATAGGCCACAGCTCTTTACGGTGCGTACTAAGCGATTGAGTCAGCTGCTGCGTTTGAACCGTACTGCTTTCCTGAACATTGTCCAGTCCAATGTCGGTGATGGGACCATAATTATGAACAATCTTCTTCAGCGCTTGAAAGACCTCAAAGACAAAGACCCCATTATGGAAGGTGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGTTTTGCAACACTTAGGGGGGATGATTTGCTTTTGCACCAGCTGTTGAAACGAGGTCTGGACCCGAATGAATCCGACAATAATGGGAGGACTGCACTCCATATTGCAGCCTCTAAAGGAAATGAGAATTGTGTGCTTCTTTTACTGGACTATGGAGCAGATCCCAATAGTAGAGATTCAGATGGGAATGGGCCATTATGGGAAGCAATACTAGGCGGCCATGAGCCCGTAGTCCAGCTACTTGTCGACAATGGTGCTAATTTGCGATCGGGAGAAATGGGACATTTTGCATGCACTGCTGCAGAGCAAAACAATCTCCAGTTGCTCAAGGAGATTCTCCGATATGGAGGAGATGTTACAAGTGCCAAGAACAATGGAAACACAGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATTGTCAAATTCCTTCTCAAACATGGAGCTGATGTTGATAAACCAGATGTCCATGGTTGGACTCCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATCAAATTCCTCTTCCAGACAACAAAAGAAGCAAGATCTCAATCTGTGGTCTCCATTCCTGAGACTGGAATTCGTTTGCTCGGAAGATTCACAAGCGAGCCTATGATTCGCCCTCTACTACAGGAAGCGAATGAAGGTTCATGGCCTAGTCAATCTCGTCCGAGGCGTAGGACGAATAATTTCCACAACTCATTGTTTGGGATTATGTCAGCAGCACATTCAGGTGAGAGAGATATTCTTTTCCCTGATAATCAAACCAGAGAAGAGAAGAGTTTTGAAATCAACCCTGCAAGAGTGGTGATTAGTTGTCCGGAGATTGGCGAAGTTGTAGGAAAGTTGGTGCTGCTTCCAGGAAGCTACAATGAGCTTCTTGAGGTTGGTGCGAAGAAATTCGGTTTCATGCCATCAAAGGTTTTGAACAAAGATGGAGTTGAGATTGAAGATATAGAGGTCATTAGAGATGGTGATCATCTTGTCTTTGTCAGTAATGATAGAACTCAAAATGTCTCCACATTGGAAGTTTAA 2640 42.69 MEGVRNRGVFRVSVCGQEETEQISRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRFWQTFLVVLVVYTAWVSPFEFGFLKKPEGPLSITDNVVNGFFAVDIILTFFVAYLDKTSYLLVDNPKKIALKYATSWLVLDVISTIPSELARKISPSPLSSYGLFNMLRLWRLRRVSALFSRLEKDRKYNYFWVRCAKLLCVTLFAVHCAACFYYLIAARYHDPKRTWIGASMENFLEQSLWIRYITAIYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFANRNQLPLRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVIGEANTGDLCGEVGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQRLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGNENCVLLLLDYGADPNSRDSDGNGPLWEAILGGHEPVVQLLVDNGANLRSGEMGHFACTAAEQNNLQLLKEILRYGGDVTSAKNNGNTALHVAVCEDNIEIVKFLLKHGADVDKPDVHGWTPRDLADQQGHEEIKFLFQTTKEARSQSVVSIPETGIRLLGRFTSEPMIRPLLQEANEGSWPSQSRPRRRTNNFHNSLFGIMSAAHSGERDILFPDNQTREEKSFEINPARVVISCPEIGEVVGKLVLLPGSYNELLEVGAKKFGFMPSKVLNKDGVEIEDIEVIRDGDHLVFVSNDRTQNVSTLEV 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44580236 44586085 - evm.model.ptg000008l.735 HCH8g0800 549898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0800 879 Gene3D - 528 711 IPR036770 -
HCH8g0800 879 SMART cnmp_10 380 497 IPR000595 -
HCH8g0800 879 SUPERFAMILY cAMP-binding domain-like 305 500 IPR018490 -
HCH8g0800 879 Gene3D - 63 301 - -
HCH8g0800 879 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH8g0800 879 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH8g0800 879 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH8g0800 879 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH8g0800 879 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH8g0800 879 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH8g0800 879 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 PANTHER POTASSIUM CHANNEL AKT1 22 864 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
HCH8g0800 879 SMART ANK_2a 593 622 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 SMART ANK_2a 560 589 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 SMART ANK_2a 527 556 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 SMART ANK_2a 624 653 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 SMART ANK_2a 657 686 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
HCH8g0800 879 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 ProSiteProfiles Ankyrin repeat region circular profile. 657 688 - -
HCH8g0800 879 Gene3D Jelly Rolls 344 506 IPR014710 -
HCH8g0800 879 ProSiteProfiles Ankyrin repeat region circular profile. 593 620 - -
HCH8g0800 879 ProSiteProfiles KHA domain profile. 803 879 IPR021789 -
HCH8g0800 879 Pfam Ion transport protein 62 307 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH8g0800 879 Pfam Cyclic nucleotide-binding domain 399 485 IPR000595 -
HCH8g0800 879 CDD CAP_ED 380 485 IPR000595 -
HCH8g0800 879 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 FunFam Potassium channel KAT2 368 504 - -
HCH8g0800 879 Pfam Ankyrin repeats (3 copies) 631 710 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 Pfam Ankyrin repeats (3 copies) 532 620 IPR002110 GO:0005515(InterPro)
HCH8g0800 879 FunFam Potassium channel SKOR 63 301 - -
HCH8g0800 879 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
HCH8g0800 879 ProSiteProfiles cAMP/cGMP binding motif profile. 380 499 IPR000595 -
HCH8g0800 879 Pfam KHA, dimerisation domain of potassium ion channel 803 865 IPR021789 -
HCH8g0800 879 SUPERFAMILY Ankyrin repeat 531 709 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1013 HCH-Chr10:29122019 HCH8g0800 HCH-Chr8:44580236 7.80E-89 transposed
HCH11g0848 HCH-Chr11:39275228 HCH8g0800 HCH-Chr8:44580236 9.50E-135 transposed
HCH12g0326 HCH-Chr12:1876562 HCH8g0800 HCH-Chr8:44580236 6.30E-06 transposed
HCH3g0767 HCH-Chr3:5582232 HCH8g0800 HCH-Chr8:44580236 1.80E-09 transposed
HCH12g0347 HCH-Chr12:1988391 HCH8g0800 HCH-Chr8:44580236 8.70E-288 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0800 K21867 - csv:101220784 1559.27