Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0813 ATGAAAGAACCTCCGTTGTCTCGTCACCGAAAACCCAATAACCTGAAGCTCATTATCAGCTTCAATGGAAAATTCCACTTACTTCCGTACACCAATAAAACCCGCTACGTCGGCGGCGAAACACGTATCGTTTCTCTAGATCGTAACAACGCTAACTTCTCCTTCTCCAACCTTCGCTCAAAAGTCTCCAATCTTTGCCCTAATTCCTCTTCCTTTTCCCTCAAATTCCAGTTTCCTAATTCCGACGAGTCACCTCTTATCTTAATCGACTCTGAAGAAGATTTCCGATCCTTGATCGATGAATACGATAAGTTCGTTTCGTACGATAAACTCGCGAGACTTCGCGTTTTCGTTTGTAGGAAAAGTAATGTGAAATACGATGATAGTGATAGGAAGGGTAATATGGGGAAAGGGGATTTGGCTAGTCGTCGTGGCTTTCCATTGAATCCTAGGGATGGGAATTTACGTTTGGAAACTAGAATAGAGTGCTCTAAATTACGGGTTAATTATTCCTGTGTGAAGTTTCCTTATCCTGGTTGCAATAGGGAAAATATCGTGCCATGGACTACTGGTGATATGGTTAATAATGGTTGCAATGTGAAATCTTTTTCTAGTGTAGCTAATGTTAAGTATCAGACTCAGAGAAGTGATCAGAATAATGAGATGGAGATGGGGAATTGTAGAGGTGTGGGAATTGATGAGAAGTTTTCAATTGGGAAATTTGATTCTGGGTTTGTTCCAATTTTAGATTTTTCTAAGGAGGGAATGTTTGTAAGATCATATGAGTATGACGCGTGGAGGTATGAGTCTAGGTTAAACGGTGACTTGAAGTTTAGAAAACCAGTTGGCCCTGGAGATTTTGATGAATTTCATTTAGTGTGTTATGATGAATGTGTGGAGGTAGGGGATCGGTTTCTCGAGCCTTGTGTTGTTAAGTCTGCATTGCCGTGCTTGAAGGTAATGGAGAATCGGGTTGATGTATTGAATGGGATAAAAAGTCAGGCTCACGAAGTTCCACATCTATGTGAGCCTAGCCATTTTGAGCTACAAAAGGCACATGGCAAAATTGAACCACGAATAGATGCTATTAATCATTGTTATGACAATAGCAAGCTTCCAGATGGGGTAGCAGTTGTTGACTCCTATTGCAATTTGATGACTGAGAGTTGTAACTTGCTATGTAAACCTGCACCTTATGTCGATATTTTGTCTCACAAACTTTTGTTATCATCGCGTAAAGGTGTTGAAGTTGAGCCACTTTCCGAACTGTCATCTTGTGCTTCTGAGGTTCTTTGTGAACCGTTGCAAAAAATTCAAGCAAAATGTAGATATCTCATGGGTCAAGAAGAAGTCAGTGACCCGCTAGGTCTTGAATCGAATGCAGTTATCTCAACTCCATCCTTGCAGAATGTAGAACTACAAAAGGGTTGTGTAGATGAAGACGTAGGGATTACTCAAGATCCCAAGTCTACTCTATACTTTGACAAAAAGGGAGAGGCTCAAGAAAGCGAGAAATGCTCTGAGGTCATTCATGGAATTTCTTCAGATCTCATTGCATCTTACTCTCATCCAGCCACTCGAGAGTTGCAGACAATAAAAAATATTGACCTTGAATACATAAGAGAACTTGGCTCTGGTGCATATGGAACTGTGTTCTATGGAAAATGGAAGGGGTCCGATGTTGCTATCAAAAAGATTAAGCAAAGTTGCTTCGATGATGGCTTATTGGAGGAGGACCGATTGATTGCAGATTTTTGGAAGGAAGCACACATTCTAGGTCAGCTTCACCACCCAAATATAGTGGCATTTTATGGCGTTGTCACAGATGGACCTGCAACAAATTTAGCTACAGTTGCAGAGTATCTTGTGAATGGCTCCCTAAAACAAGTTTTGCGGCGAAAAGATAGAACTATTGATCGTCGGAAGAGGCTGATTATAGCAATGGATGCAGCCTTTGGTATGGAATATCTACATGAGAAGAACATTGTTCATTTCGATTTAAAATCTGATAACTTACTCGTGAACATGAGGGATCCTCAGCGACCAATCTGCAAGATTGGTGATCTTGGCTTATCAAAAATTAAGCAGAGAACACTAGTGTCTGGTAGTTTAAGAGGAACCATTTCCTGGATGGCTCCTGAACTGTTGAATAGTAACAACAACCTCGTAACAGAAAAGGTTGATGTGTACTCATTTGGAATTGTCATGTGGGAACTCTTGACTGGACATGAGCCCTATTCAAACTTGCGTTCAGAGGAAATTATAGCTGGCTTAATCAAAGGAGACTTGAGACCTGAAATTCCGAGCTGGTGCGATCCTTCGTGGAGGTCGCTGATGCAGAAATGTTGGTCCTCTGATCCTGATTCTAGACCCCCCTTCTCGGAAGTTGCGAAGGAGCTACGTTCTATGTCGGAGGCCATGAAGATCAAGTGA 2433 41.43 MKEPPLSRHRKPNNLKLIISFNGKFHLLPYTNKTRYVGGETRIVSLDRNNANFSFSNLRSKVSNLCPNSSSFSLKFQFPNSDESPLILIDSEEDFRSLIDEYDKFVSYDKLARLRVFVCRKSNVKYDDSDRKGNMGKGDLASRRGFPLNPRDGNLRLETRIECSKLRVNYSCVKFPYPGCNRENIVPWTTGDMVNNGCNVKSFSSVANVKYQTQRSDQNNEMEMGNCRGVGIDEKFSIGKFDSGFVPILDFSKEGMFVRSYEYDAWRYESRLNGDLKFRKPVGPGDFDEFHLVCYDECVEVGDRFLEPCVVKSALPCLKVMENRVDVLNGIKSQAHEVPHLCEPSHFELQKAHGKIEPRIDAINHCYDNSKLPDGVAVVDSYCNLMTESCNLLCKPAPYVDILSHKLLLSSRKGVEVEPLSELSSCASEVLCEPLQKIQAKCRYLMGQEEVSDPLGLESNAVISTPSLQNVELQKGCVDEDVGITQDPKSTLYFDKKGEAQESEKCSEVIHGISSDLIASYSHPATRELQTIKNIDLEYIRELGSGAYGTVFYGKWKGSDVAIKKIKQSCFDDGLLEEDRLIADFWKEAHILGQLHHPNIVAFYGVVTDGPATNLATVAEYLVNGSLKQVLRRKDRTIDRRKRLIIAMDAAFGMEYLHEKNIVHFDLKSDNLLVNMRDPQRPICKIGDLGLSKIKQRTLVSGSLRGTISWMAPELLNSNNNLVTEKVDVYSFGIVMWELLTGHEPYSNLRSEEIIAGLIKGDLRPEIPSWCDPSWRSLMQKCWSSDPDSRPPFSEVAKELRSMSEAMKIK 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44679422 44683238 - evm.model.ptg000008l.722 HCH8g0813 549911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0813 810 PRINTS Tyrosine kinase catalytic domain signature 619 632 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0813 810 PRINTS Tyrosine kinase catalytic domain signature 656 674 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0813 810 PRINTS Tyrosine kinase catalytic domain signature 727 749 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0813 810 PRINTS Tyrosine kinase catalytic domain signature 771 793 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0813 810 Pfam PB1 domain 30 118 IPR000270 GO:0005515(InterPro)
HCH8g0813 810 ProSitePatterns Protein kinases ATP-binding region signature. 543 565 IPR017441 GO:0005524(InterPro)
HCH8g0813 810 ProSiteProfiles Protein kinase domain profile. 537 807 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0813 810 SMART serkin_6 537 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0813 810 SMART PB1_new 29 121 IPR000270 GO:0005515(InterPro)
HCH8g0813 810 SUPERFAMILY Protein kinase-like (PK-like) 520 798 IPR011009 -
HCH8g0813 810 SUPERFAMILY CAD & PB1 domains 32 127 - -
HCH8g0813 810 Gene3D Transferase(Phosphotransferase) domain 1 624 810 - -
HCH8g0813 810 Gene3D - 33 121 - -
HCH8g0813 810 CDD STKc_MAP3K-like 543 800 - -
HCH8g0813 810 Gene3D Phosphorylase Kinase; domain 1 523 623 - -
HCH8g0813 810 PANTHER SERINE-THREONINE PROTEIN KINASE 27 804 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH8g0813 810 Pfam Protein tyrosine and serine/threonine kinase 538 800 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0813 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0813 HCH-Chr8:44679422 HCH8g0902 HCH-Chr8:45359442 3.80E-08 dispersed
HCH8g0813 HCH-Chr8:44679422 HCH3g0500 HCH-Chr3:3237128 1.30E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81705 PF07714 PK_Tyr_Ser-Thr 6.20E-63 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0813 - - - 0.0