Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0835 ATGGAGCACAAAAAAGCCATCTGCTCCATTATGATTCTTGCAATTTTAGGAATGAGTTTGCCTGTTAAAGGACAGCTGAGTATTGGGTTCTATTTAAGATCATGTCCAAAGGCAGAGTTCATTGTGAGGTCCACTGTTGAATCATATTTCAAACAAGATCCCACCATTGCAGCAGGCTTGCTCAGGCTCCATTTCCATGACTGTTTTGTCCAGGGATGTGATGGTTCAGTGCTGATTGCTGGTGCTTCTGCCGAGAGAACTTCATCACCCAATATGGGATTAAGAGGGTTTGAATTGATTGATGATGCGAAAACACAACTGGAAGCTGCGTGCCCTGGTGTCGTCTCTTGTGCTGATATTCTTGCTTTGGCTGCTCGTGATGCTGTTAACTTGAGTAATGGACCAAGTTGGTCAGTGCCCACTGGAAGAAGAGATGGGAGGGTTTCTTTGAGATCCCAAGCTCAAAATTTGCCTTCTCCATTTGAGTCCATCGCTGAGCACAAGAAAAAATTTGCAGAAAAAGGCCTTGATGAAGAAGATCTTGTTACCCTACTTGGAGCTCACTCTATTGGGCAAACAGATTGCCAATTATTCAGCTACCGTCTACACAGCTTCACATCAACAGGCAATTCAGATCCAACCATAAATCCATTATTCTTATCAGAACTGAAAACTGTTTGTCCCCTAGATGGAGATGGGACCATAAAGGTGGCCTTAGACAGAAACAGTCAGCTGAATTTTGATACCAGTTTCTACAAGAATATAAGAGATGGCAATGGAGTTTTGGAGTCTGATCAGAGGCTATGGGGTGATGAGTCAACAAGAGACATTGTGCAGAAGTATGCTGGGACTATAAGGGGATTACTGGGCCTCAGATTTGATTATGAATTTAAGAAAGCCATGATTAAGATGAGCAGCATTGAGGTCAAGACTGGCACTCAAGGAGAGATCAGAAAAACATGTTCCAAGTTCAATATATATTAG 984 42.58 MEHKKAICSIMILAILGMSLPVKGQLSIGFYLRSCPKAEFIVRSTVESYFKQDPTIAAGLLRLHFHDCFVQGCDGSVLIAGASAERTSSPNMGLRGFELIDDAKTQLEAACPGVVSCADILALAARDAVNLSNGPSWSVPTGRRDGRVSLRSQAQNLPSPFESIAEHKKKFAEKGLDEEDLVTLLGAHSIGQTDCQLFSYRLHSFTSTGNSDPTINPLFLSELKTVCPLDGDGTIKVALDRNSQLNFDTSFYKNIRDGNGVLESDQRLWGDESTRDIVQKYAGTIRGLLGLRFDYEFKKAMIKMSSIEVKTGTQGEIRKTCSKFNIY 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44859352 44860950 - evm.model.ptg000008l.700 HCH8g0835 549933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0835 327 Gene3D - 29 325 - -
HCH8g0835 327 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
HCH8g0835 327 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
HCH8g0835 327 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PANTHER PEROXIDASE 25-RELATED 18 321 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH8g0835 327 Pfam Peroxidase 42 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 Gene3D Peroxidase, domain 2 158 304 - -
HCH8g0835 327 FunFam Peroxidase 158 304 - -
HCH8g0835 327 FunFam Peroxidase 29 170 - -
HCH8g0835 327 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH8g0835 327 SUPERFAMILY Heme-dependent peroxidases 25 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH8g0835 327 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1118 HCH-Chr4:7301568 HCH8g0835 HCH-Chr8:44859352 2.40E-65 dispersed
HCH4g1119 HCH-Chr4:7304817 HCH8g0835 HCH-Chr8:44859352 6.80E-68 dispersed
HCH4g1870 HCH-Chr4:49558800 HCH8g0835 HCH-Chr8:44859352 1.60E-109 dispersed
HCH4g1871 HCH-Chr4:49611893 HCH8g0835 HCH-Chr8:44859352 6.20E-93 dispersed
HCH4g1904 HCH-Chr4:52460140 HCH8g0835 HCH-Chr8:44859352 3.30E-80 dispersed
HCH7g0030 HCH-Chr7:217748 HCH8g0835 HCH-Chr8:44859352 1.20E-57 dispersed
HCH7g0118 HCH-Chr7:769221 HCH8g0835 HCH-Chr8:44859352 1.40E-51 dispersed
HCH8g0835 HCH-Chr8:44859352 HCH7g0225 HCH-Chr7:1503973 2.90E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0835 K00430 - csv:101214998 487.648