Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0837 ATGGTGCAGTTAAAGAAGTTCAGAGGTGTCAGACAACGTCATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCGTTATTGAAGAGAAGGATATGGTTAGGAACATTTGAGACAGCCGAAGAAGCAGCCAAAGCCTACGATCAAGCTGCCATTTTGATGAGTGGACGAAACGCCAAAACTAATTTTCCGACATCCCATCCTTCCAATAGCGGCTGCGGTTCTAAGAATACCACGACCGAAAGTTCAAATTCGACAAATGGTTTGTCTCAAATTCTACAAGCAAAGCTTAAAAAATGTTGTAGGGCTCCTTCACCTTCCATGACTTGTTTGAGGCTCGACACTGAGAATTCCAACATCGGCGTGTGGCAAAAACGCGCCGGCCGACGACCGGTCTCGGACTGGGTTATGACCGTCGAGCTTGGAAACAAGAAGAACGTCCTTACCGCCGGTGCTGATCCTCATGAGGTGGCGGGGAATTTACAGCTGATGGGTGGTTCTGATCAGTCTCCGACGGCGGCGGAAGGGTCGGAGACAGAAATCCGATCTGAGATGGATGAAGAAGAGAGAATGGTGGCATTGCAAATGGTAGAGGAATTGCTTCATATGAATTATGATCCTAGTGAAGGGTTTGTTGGAATTCTTGAAGAAGGAAATGAAACTTTCCTTTAG 669 47.23 MVQLKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAILMSGRNAKTNFPTSHPSNSGCGSKNTTTESSNSTNGLSQILQAKLKKCCRAPSPSMTCLRLDTENSNIGVWQKRAGRRPVSDWVMTVELGNKKNVLTAGADPHEVAGNLQLMGGSDQSPTAAEGSETEIRSEMDEEERMVALQMVEELLHMNYDPSEGFVGILEEGNETFL 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44874741 44875600 - evm.model.ptg000008l.698 HCH8g0837 549935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0837 222 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0837 222 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
HCH8g0837 222 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0837 222 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0837 222 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0837 222 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 145 IPR050913 -
HCH8g0837 222 MobiDBLite consensus disorder prediction 58 86 - -
HCH8g0837 222 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0837 222 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0837 222 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0837 222 FunFam Ethylene-responsive transcription factor 2 5 64 - -
HCH8g0837 222 MobiDBLite consensus disorder prediction 162 185 - -
HCH8g0837 222 MobiDBLite consensus disorder prediction 162 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0276 HCH-Chr6:3882899 HCH8g0837 HCH-Chr8:44874741 7.10E-21 dispersed
HCH8g0837 HCH-Chr8:44874741 HCH11g0890 HCH-Chr11:39838209 2.10E-17 dispersed
HCH10g0411 HCH-Chr10:3283636 HCH8g0837 HCH-Chr8:44874741 2.40E-59 wgd
HCH12g0362 HCH-Chr12:2069438 HCH8g0837 HCH-Chr8:44874741 6.70E-55 wgd
HCH6g0220 HCH-Chr6:2884158 HCH8g0837 HCH-Chr8:44874741 7.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34031 PF00847 AP2 2.30E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0837 - - - 0.0