Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0843 ATGAAGCGACTATCTAGAAAAGTCGGAAAGTATGAGGTCGGGCGAACCGTTGGCGAAGGGACGTTCGCGAAGGTTAAGTTTGCACGTAACATGGAGACGGGGGAGAGTGTGGCCATGAAGGTTTTGGCTAAAAGCAGAATTCTCAAGCATAAAATGGTAGAACAGATTAAGAGGGAGATATCGATAATGAAAATTGTGAGGCATCCACACATTGTCAGACTGCATGAGGTGCTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTTACTGGAGGTGAACTATATGATAAAATAGTTCTTCAGAAGAGGCTTCCAGAGATTGAGTCTCGGCGATACTTTCAACAACTGGTAGATGCAGTTGCTCACTGTCACAGCAAGGGTGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTTATGGAAATCTGAAGGTTTCCGACTTTGGACTGAGTGCACTGTCTCGACAAGATGTTGAACTGCTTTACACCACATGTGGAACTCCTAATTATGTAGCACCCGAGGTGCTTGGAGGTCAGGGTTATGATGGTTCAGCTGCAGATATATGGTCGTGTGGAGTCATCCTCTATGTAATTCTGGCTGGATATCTACCATTTTCAGAGACGGACCTTCCCACTCTATACAAAAAGATAAATGCAGCAGAGTATTCCTTTCCATATTGGTTCTCGTCTGGTGCGCAGTCCTTGATACAAAAGATTCTCAATCCCAATCCTAAAACCCGCATTCGGATTGAAGAAATCAGAAAAGATCAATGGTTCAGAAGAAACTACATCCCTGCCAGACTAGGAGAAGATGAGGAAGTGAATTTAGATGATGTTCATGCTGTCTTTGACGACATTGAGGAACGGTATGTAGCTGATCAGTCAGAAAAAAGTGATGATGGACCTTTGATAATGAATGCATTTGAGATGATAACATTATCTCAAGGATTAAATCTGTCAGCATTATTTGACAGGCGACAGGACTATATAAAGCGGCAAACTCGATTTGTTTCTCGTAAACCTGCTAATGTTATAATGTCTACGATTGAAGCAGTAGCGGAAGCAATGAGTCTAAGGGTGCACACACGTAATTTCAAGACTAGGCTGGAAGGGACACCCAGAAACAAGGTTGGACAGTTTGCAGTTGTCCTGGAGATTTACGAAGTGGCACCATCGCTATTTATGGTAGATGTTCGTAAGGCCGCTGGAGATACTCTAAAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAATATAATCTGGAAACCATCTGAGGGAATGGGAAATTCAAGCCTGCTTAGAACCATGACTAATTGA 1341 42.51 MKRLSRKVGKYEVGRTVGEGTFAKVKFARNMETGESVAMKVLAKSRILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVTGGELYDKIVLQKRLPEIESRRYFQQLVDAVAHCHSKGVYHRDLKPENLLLDAYGNLKVSDFGLSALSRQDVELLYTTCGTPNYVAPEVLGGQGYDGSAADIWSCGVILYVILAGYLPFSETDLPTLYKKINAAEYSFPYWFSSGAQSLIQKILNPNPKTRIRIEEIRKDQWFRRNYIPARLGEDEEVNLDDVHAVFDDIEERYVADQSEKSDDGPLIMNAFEMITLSQGLNLSALFDRRQDYIKRQTRFVSRKPANVIMSTIEAVAEAMSLRVHTRNFKTRLEGTPRNKVGQFAVVLEIYEVAPSLFMVDVRKAAGDTLKYHKFYKNFCAKLENIIWKPSEGMGNSSLLRTMTN 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44916979 44921611 - evm.model.ptg000008l.692 HCH8g0843 549941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0843 446 Gene3D Transferase(Phosphotransferase) domain 1 91 272 - -
HCH8g0843 446 Gene3D Kinase associated domain 1, KA1 304 430 - -
HCH8g0843 446 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165(InterPro)
HCH8g0843 446 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0843 446 SMART serkin_6 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0843 446 FunFam Non-specific serine/threonine protein kinase 304 430 - -
HCH8g0843 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 418 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH8g0843 446 CDD CIPK_C 311 426 - -
HCH8g0843 446 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524(InterPro)
HCH8g0843 446 SUPERFAMILY Protein kinase-like (PK-like) 8 289 IPR011009 -
HCH8g0843 446 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
HCH8g0843 446 FunFam Non-specific serine/threonine protein kinase 4 306 - -
HCH8g0843 446 Pfam NAF domain 307 366 IPR004041 GO:0007165(InterPro)
HCH8g0843 446 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0843 446 FunFam Non-specific serine/threonine protein kinase 2 90 - -
HCH8g0843 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1747 HCH-Chr7:49176292 HCH8g0843 HCH-Chr8:44916979 8.70E-140 dispersed
HCH8g0843 HCH-Chr8:44916979 HCH9g0825 HCH-Chr9:5774557 3.30E-110 dispersed
HCH8g0843 HCH-Chr8:44916979 HCH4g0293 HCH-Chr4:1879796 2.40E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81706 PF00069 Pkinase 6.50E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0843 - - - 0.0