Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0848 ATGTCAAGCTGCTTAGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTGCCATGCAGCAGCTTGTTGGACATAGTGACAGTCCGATGTGGGCACTGCACTAATCTGTGGTCCGTGAATATGGCTACCGCGTTTCAGTCACTTTCCATGTCCTGGCAAGATGTCCAGGTTCCAAACTACAATCTGTACACTAGTGCACCAGAATTCCAGGGCGATTTGGGTTCCTCATCCAGATTATGTAACAGCAATAGAATGGCAATTCGAGCACCCACTACAAATATTGCAGCTGATGACAGGATTGTTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATACAATCAGTTCATAAAAGAAGAAATCCAAAGGATCAAGGCAAATAATCCTGATATTAGTCATAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTCCCTCGTATTCACTTCGGTCTCATGTTGGAAACCAACAATTAA 522 44.64 MSSCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCTNLWSVNMATAFQSLSMSWQDVQVPNYNLYTSAPEFQGDLGSSSRLCNSNRMAIRAPTTNIAADDRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPRIHFGLMLETNN 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44945370 44948037 - evm.model.ptg000008l.687 HCH8g0848 549946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0848 173 CDD HMG-box_SF 121 157 - -
HCH8g0848 173 PANTHER PROTEIN YABBY 6-RELATED 9 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
HCH8g0848 173 FunFam axial regulator YABBY 5-like 105 163 - -
HCH8g0848 173 SUPERFAMILY HMG-box 111 160 IPR036910 -
HCH8g0848 173 Pfam YABBY protein 8 167 IPR006780 GO:0007275(InterPro)
HCH8g0848 173 Gene3D High mobility group box domain 107 162 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0848 K25796 - - csv:101215951 291.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1305 HCH-Chr2:55147352 HCH8g0848 HCH-Chr8:44945370 6.60E-43 dispersed
HCH4g0030 HCH-Chr4:194527 HCH8g0848 HCH-Chr8:44945370 1.30E-28 dispersed
HCH5g0398 HCH-Chr5:2620127 HCH8g0848 HCH-Chr8:44945370 6.80E-43 dispersed
HCH6g0989 HCH-Chr6:44653049 HCH8g0848 HCH-Chr8:44945370 2.80E-38 dispersed
HCH10g0406 HCH-Chr10:3243254 HCH8g0848 HCH-Chr8:44945370 1.70E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0866 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 5.5e-48 187.6
HCH5g0398 . 73 230 C2C2-YABBY Transcription Factor Family AT2G45190 62.0 9.5e-47 183.3
HCH2g1305 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.7 1.7e-52 202.6
HCH10g0406 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.2e-42 169.9
HCH5g0398 . 30 220 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.1e-42 169.1
HCH6g0989 . 18 198 C2C2-YABBY Transcription Factor Family AT1G08465 52.4 1.3e-41 166.4
HCH8g0848 . 5 172 C2C2-YABBY Transcription Factor Family AT1G08465 53.2 1.3e-41 166.4
HCH5g0398 . 40 229 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 7.3e-52 200.7
HCH6g0989 . 28 219 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 1.8e-42 169.5
HCH1g1044 . 1 170 C2C2-YABBY Transcription Factor Family AT1G23420 56.0 6.8e-39 157.9
HCH4g0030 . 2 181 C2C2-YABBY Transcription Factor Family AT1G23420 51.1 2.8e-37 152.5
HCH10g0406 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 70.5 1.1e-60 229.6
HCH8g0848 . 7 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.9 4.8e-59 224.2
HCH2g1305 . 1 170 C2C2-YABBY Transcription Factor Family AT2G26580 58.5 1.7e-48 189.1
HCH5g0398 . 30 194 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 1.5e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34032 PF04690 YABBY 7.80E-70 CL0114 HCH TF