Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g0848 | ATGTCAAGCTGCTTAGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTGCCATGCAGCAGCTTGTTGGACATAGTGACAGTCCGATGTGGGCACTGCACTAATCTGTGGTCCGTGAATATGGCTACCGCGTTTCAGTCACTTTCCATGTCCTGGCAAGATGTCCAGGTTCCAAACTACAATCTGTACACTAGTGCACCAGAATTCCAGGGCGATTTGGGTTCCTCATCCAGATTATGTAACAGCAATAGAATGGCAATTCGAGCACCCACTACAAATATTGCAGCTGATGACAGGATTGTTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATACAATCAGTTCATAAAAGAAGAAATCCAAAGGATCAAGGCAAATAATCCTGATATTAGTCATAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTCCCTCGTATTCACTTCGGTCTCATGTTGGAAACCAACAATTAA | 522 | 44.64 | MSSCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCTNLWSVNMATAFQSLSMSWQDVQVPNYNLYTSAPEFQGDLGSSSRLCNSNRMAIRAPTTNIAADDRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPRIHFGLMLETNN | 173 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 44945370 | 44948037 | - | evm.model.ptg000008l.687 | HCH8g0848 | 549946 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g0848 | 173 | CDD | HMG-box_SF | 121 | 157 | - | - | |
| HCH8g0848 | 173 | PANTHER | PROTEIN YABBY 6-RELATED | 9 | 172 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
| HCH8g0848 | 173 | FunFam | axial regulator YABBY 5-like | 105 | 163 | - | - | |
| HCH8g0848 | 173 | SUPERFAMILY | HMG-box | 111 | 160 | IPR036910 | - | |
| HCH8g0848 | 173 | Pfam | YABBY protein | 8 | 167 | IPR006780 | GO:0007275(InterPro) | |
| HCH8g0848 | 173 | Gene3D | High mobility group box domain | 107 | 162 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g1305 | HCH-Chr2:55147352 | HCH8g0848 | HCH-Chr8:44945370 | 6.60E-43 | dispersed | |
| HCH4g0030 | HCH-Chr4:194527 | HCH8g0848 | HCH-Chr8:44945370 | 1.30E-28 | dispersed | |
| HCH5g0398 | HCH-Chr5:2620127 | HCH8g0848 | HCH-Chr8:44945370 | 6.80E-43 | dispersed | |
| HCH6g0989 | HCH-Chr6:44653049 | HCH8g0848 | HCH-Chr8:44945370 | 2.80E-38 | dispersed | |
| HCH10g0406 | HCH-Chr10:3243254 | HCH8g0848 | HCH-Chr8:44945370 | 1.70E-63 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34032 | PF04690 | YABBY | 7.80E-70 | CL0114 | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH8g0848 | K25796 | - | csv:101215951 | 291.582 |