Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0857 ATGGAGAACAAGTGTGGTTGTTGGTCTGTTTTAACTCGTTCTGTTTCAGGTGTTTGTAAATCTTCCTCTTCCAGGGATTCTGCCAACACTATTCCTAGAACTAGCCTTGTTTATGATTCTGCTACGGAGACACGATATCTAAATGCTAGCAATAGAGATTTCTGTCCCCTGAATGAAGCTGAATTAGCCTCTGATAATGCCAATCCATCACTACCAGATAACAAATCAACGAGCAAATTGCTTCAGTTTTCTTTTCATGAGCTAAAGGCTGCAACTGGAAACTTCAGACCTGATAGTATTCTTGGGGAAGGTGGATTTGGATTCGTTTTCAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCCGGATCAGGAATTACGGTGGCTGTTAAGAGCTTGAAATTAGATGGTCTTCAGGGACACAGAGAATGGGTGGCTGAGGTTTGCTTTCTTGGACAACTCCACCATTCAAATCTTGTTAAGCTTATTGGTTACTGCAATGAAGATGATCAACGCTTGCTTGTGTACGAGTTTATGAGCCGTGGAAGTCTCGAAAACCACCTTTTTAGAAGGACTATACCTCTTCCATGGTTGAATAGGATCAAGATTGCCCTTGGAGCAGCAAAAGGATTGGCCTTTCTTCATAATGGTCCAGTCCCTGTCATCTATAGAGATTTTAAAACATCCAACATCTTGCTTGATTCAGAATACAACGCGAAGCTTTCAGATTTTGGTTTTGCAAAAGCAGGGCCTGAAGGAGACAAAACACATGTTTCTACCAGAGTAATTGGGACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGACACTTGACATCCAAGAGTGATGTTTACAGCTTCGGTGTTGTGCTACTTGAGATTTTAACAGGAAGAAGATCCATGGACAAGAAACGTCCGAGCGGGGAACAAAACCTTGTATCATGGGCTCGGCCATATTTAGCTGATAAACGAAAACTGTATCATATAGTAGACCCCCGCTTGGAATTGAATTATTCCATAAAAGGGGTGCAAAAGGTCTCCCAGCTTGCTTGCAATTGTCTCAGCAGGGACCCAAAATTACGTCCTACAATGGATGAAATTGTAAAGATTCTTACTCCACTGCACGACCTTAACGACCTCGCCATCCTATCATCTCACTGCCGACTATCTTCACAAGGGAGGCGCAAGAAGAAACCCGAAGGCCTCACTTACTCTCAAAGCTTCAGAGCATCTCCATTGAATACTGGAAAGCGGCATGTAAGGTGA 1275 43.06 MENKCGCWSVLTRSVSGVCKSSSSRDSANTIPRTSLVYDSATETRYLNASNRDFCPLNEAELASDNANPSLPDNKSTSKLLQFSFHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKLDGLQGHREWVAEVCFLGQLHHSNLVKLIGYCNEDDQRLLVYEFMSRGSLENHLFRRTIPLPWLNRIKIALGAAKGLAFLHNGPVPVIYRDFKTSNILLDSEYNAKLSDFGFAKAGPEGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYHIVDPRLELNYSIKGVQKVSQLACNCLSRDPKLRPTMDEIVKILTPLHDLNDLAILSSHCRLSSQGRRKKKPEGLTYSQSFRASPLNTGKRHVR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45028191 45031163 - evm.model.ptg000008l.678 HCH8g0857 549955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0857 424 FunFam Probable serine/threonine-protein kinase PBL8 181 394 - -
HCH8g0857 424 PANTHER OS01G0588500 PROTEIN-RELATED 70 378 IPR050823 -
HCH8g0857 424 SUPERFAMILY Protein kinase-like (PK-like) 77 387 IPR011009 -
HCH8g0857 424 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524(InterPro)
HCH8g0857 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0857 424 MobiDBLite consensus disorder prediction 394 424 - -
HCH8g0857 424 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0857 424 CDD STKc_IRAK 101 377 - -
HCH8g0857 424 Gene3D Transferase(Phosphotransferase) domain 1 181 389 - -
HCH8g0857 424 ProSiteProfiles Protein kinase domain profile. 95 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0857 424 FunFam Serine/threonine-protein kinase BIK1 63 180 - -
HCH8g0857 424 Gene3D Phosphorylase Kinase; domain 1 71 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0954 HCH-Chr1:57764722 HCH8g0857 HCH-Chr8:45028191 3.80E-136 dispersed
HCH8g0857 HCH-Chr8:45028191 HCH9g0201 HCH-Chr9:1180602 6.00E-138 dispersed
HCH8g0857 HCH-Chr8:45028191 HCH13g0758 HCH-Chr13:6799006 4.20E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81707 PF07714 PK_Tyr_Ser-Thr 5.70E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0857 - - - 0.0