Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0917 ATGACTATAGAGAGCCAAAGCTTTGATTTTGCTGGTGAAGATGGTGCCACTGATCGATTCCCAATTGGTATGAGAGTTCTTGCTGTTGATGATGACCCTATTTGCCTCAAAGTATTGGAGAATCTACTTCGTAAATGCCAATATCATGTTACTACGACTAAGCAATCGGTTCAGGCTCTGAAAATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATTAGTGATGTGAATATGCCAGATATGAATGGTTTCAAGCTCCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATTATGTTATCAGCACATAGTGATACCGATCTTGTTATGAAGGGGATTTCACACGGTGCTTGTGACTACCTGTTGAAACCTGTCCGAATCGAGGAGCTAAAAAACATTTGGCAACATGTAATTCGAAGAAAGAAGTTGGAACCTAAGGAGAAAAACAAGTTTCCTAATCAAGGAAAGGCTCAAAATGGAAGCAGTGAAGGTGAACAAGGCATCTCATCTACAGGTAATGCAGATAATGCATCATTCAACAGGAAACGGAAGGAACAAGATGAAGACGAGGAAGAAGAAGGAAAAGAGGATGGGCTTGATAATGATGACCCTTCAAACCCAAAGAAGCCTAGGGTTGTATGGTCAGTTGAGTTGCACAGGAAGTTTGTTTCAGCTGTTAATCAGTTGGGTCTTGAAAAAGCTGTGCCAAAGAAAATCCTGGATTTAATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCGAGCCATTTGCAGAAATATAGGCTCTACCTGAAGAGGATCAGTAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCGCTTACATGCGTGTAGGGTCACTTGATGGATTTGGAGATTTGCATAGCTTTGCAGGATCAGGACGGCTTCCAAACTCTACATTATCATCATATTCACCGGGTGGAATACTTGGACGGTTGAACTCCCCAGCTGGAATGAGCCTGCATGGGATCGCTTCTTCCGGACTGATCCAGCAAGGCTCCCAAAATTTGAACTGTTCTATAAATACCTTGGGAAAACTCCAGCCAAACATGTTACCTTCCAACCAAACTACAAGTCTACTGCAAGGAATTCCGACGTCACTAGAGCTCAGCCAGTTGCAACAGAGAAAGTCCACCTCTCCAATCGGAGACTTCAATTACATTAATGAGACATCAGGGTTTGCAGTTCCCAACAACTTCCCGGATAGTAGAGTGAATGTTGGTATTTCAAGCAACGCTGTTTCCTGTGCCCCTATGATGCTACAGGGAGGCATGCAAGCATACGGAAATCAGACTTCCCTTAGGGTGGATCCATTAAACTCAGAATCTTATGGCATAGACATTGGTGGTTCTAATTTTTTGGATCCTGATCCTTCTAATGATAACTGGCAGGGTGCAGTACAATTATCTAGATTCTCAACTTCTTTGACACCAAATGAAGCTTATCCCAATAACCAATTGCATGCAATTAACTCAAATCTTTCTTCTACTCGCTCGACAATTGGAAACATCCCCGTTGATTTTTCCTCTAGAAGTGCTGCTTCAGCTCCCTTACACAACTCGAGAAATATGCAATGCCAGGTAGGCGTGGCTGGCAATGTTGTCCAAGCTATGAATACCATGCCAAAGCAAAGTTGGGAAGAGTATAAGCATGATTACAATCGAAATCTACAGCATAACTTTGGTGCAATGAATTCTCTGGTTTCTACCCATGGTATTGTAAGTCCCTTGAGCCAGAATTTCAATCAGAATAGTGCAGTATGTGATGGGAAGATTGATTCATCCTTGATTACCCCATCAAATGCTGGGGCTCTATCACTTGGACAACATAGTGTGGTTGAAAAATTCGGTACTGACACAAAGATGAATGCTGATGGAAACTACCTCTTGAATCAAGCAAACTCACATGGTGGATTGCTTCAAAGCAACTTTGAACCTTTCGATGATATAATGAATGTGATGATCAAACGGGAACAAAATGAAATACCAGTAATGGATGGACGATTTGGATTCGATAACGAGTCTCTTGGATCATGCATTTGA 2088 41.95 MTIESQSFDFAGEDGATDRFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTKQSVQALKMLRENRNKFDLVISDVNMPDMNGFKLLELVGLEMDLPVIMLSAHSDTDLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKEKNKFPNQGKAQNGSSEGEQGISSTGNADNASFNRKRKEQDEDEEEEGKEDGLDNDDPSNPKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGAYMRVGSLDGFGDLHSFAGSGRLPNSTLSSYSPGGILGRLNSPAGMSLHGIASSGLIQQGSQNLNCSINTLGKLQPNMLPSNQTTSLLQGIPTSLELSQLQQRKSTSPIGDFNYINETSGFAVPNNFPDSRVNVGISSNAVSCAPMMLQGGMQAYGNQTSLRVDPLNSESYGIDIGGSNFLDPDPSNDNWQGAVQLSRFSTSLTPNEAYPNNQLHAINSNLSSTRSTIGNIPVDFSSRSAASAPLHNSRNMQCQVGVAGNVVQAMNTMPKQSWEEYKHDYNRNLQHNFGAMNSLVSTHGIVSPLSQNFNQNSAVCDGKIDSSLITPSNAGALSLGQHSVVEKFGTDTKMNADGNYLLNQANSHGGLLQSNFEPFDDIMNVMIKREQNEIPVMDGRFGFDNESLGSCI 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45479988 45483848 + evm.model.ptg000008l.618 HCH8g0917 550015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0917 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 374 IPR045279 GO:0009736(InterPro)
HCH8g0917 695 MobiDBLite consensus disorder prediction 147 212 - -
HCH8g0917 695 MobiDBLite consensus disorder prediction 154 179 - -
HCH8g0917 695 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
HCH8g0917 695 Gene3D - 208 270 - -
HCH8g0917 695 PIRSF RR_ARR_type-B 1 695 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
HCH8g0917 695 Gene3D - 24 198 - -
HCH8g0917 695 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
HCH8g0917 695 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
HCH8g0917 695 CDD REC_typeB_ARR-like 26 140 - -
HCH8g0917 695 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
HCH8g0917 695 SUPERFAMILY CheY-like 23 148 IPR011006 -
HCH8g0917 695 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
HCH8g0917 695 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
HCH8g0917 695 FunFam Two-component response regulator 207 270 - -
HCH8g0917 695 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1050 HCH-Chr4:6771679 HCH8g0917 HCH-Chr8:45479988 1.10E-11 dispersed
HCH5g0302 HCH-Chr5:1881904 HCH8g0917 HCH-Chr8:45479988 1.70E-20 dispersed
HCH6g1090 HCH-Chr6:45528900 HCH8g0917 HCH-Chr8:45479988 1.60E-21 dispersed
HCH6g1728 HCH-Chr6:49883382 HCH8g0917 HCH-Chr8:45479988 1.20E-81 dispersed
HCH7g1048 HCH-Chr7:42435263 HCH8g0917 HCH-Chr8:45479988 8.40E-86 dispersed
HCH8g0917 HCH-Chr8:45479988 HCH8g1021 HCH-Chr8:46223759 7.00E-51 dispersed
HCH10g0367 HCH-Chr10:2965992 HCH8g0917 HCH-Chr8:45479988 8.00E-185 wgd
HCH12g0404 HCH-Chr12:2307853 HCH8g0917 HCH-Chr8:45479988 1.80E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34034 PF00072 Response_reg 5.40E-26 CL0304 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0917 K14491 - csv:101213687 1067.76