Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0922 ATGCAGCCTTGTAGCAGAGAAATGCAAGGATTAAACTCATTCTTAAACCAATCTCAGATTTCCCTTCAAGACCTTCAAAACGATCACAATCATCATCATCACCACCACTTAAACCAACCACCTCCGCAGCCGCCGCCGCCGCAGATGCTTCATCATAATTACGACCCCACGCCCACTTCCTCACACGATGACTTTCTAGAGCAAATGCTGAATACCATCCCTTCTTCATGTTCATGGCCTGACCTAATCACTAAATCCCCTTGGGACCTTAATCCCATCAAAAACATTCCCTCCGATGAAACTCCTTTGGATGATTCCTCCACTCTCGCTTCCAAGCTTCGAACCCACCAAATCAGCCCTAACCCCAACTCTTCTGCTGCAAAGCTTCTCCACCAGCAACTTCTCATGTCTAGAGGAATTGGAATTCCAGAGCATGCTCTCGGACTCCCCCCTATGCCTTTGTCACTTGGGAACGGAGAGATTGATCGCTCTCAAAACGATGTCGCTGAAGGATCCTGCTTCCGGACCCCTAACTCGGGTGGTTCCATGCAAGCACATAGCTTTGGAGCTCAAGGTGGCAACGCTATGAATCAAACTCCGGGTAGTGGTTCTGCCGGAGTTTCTCCGTCTCAGCCCAAACAAAAGGTCAGGGCTCGCAGAGGTCAAGCCACTGACCCACACAGTATTGCTGAAAGGCTTAGGAGAGAGAGAATTGCAGAGAGAATGAAAGCTCTTCAAGAACTCGTTCCCAATGCCAATAAGACAGACAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTCCAGCTTCAAGTCAAAGTTCTGAGCATGAGCAGATTAGGAGGCGCCGGTGCTGTGGCTCCCCTCGTTGCTGACGTGTCCTCTGAGGGGGGTGGTGATTGTATGCAAGGAAACGGTAACGGAAACGGTGGAGGGAACGGTCGGGGTTCAAATGGGAACCAAACAACGTCGTCAAATAACGACAGTATGACGGTAACGGAGCACCAGGTGGCAAAGCTAATGGAAAAAGACATGGGGTCCGCGATGCAATATTTGCAAGGAAAGGGGCTTTGTCTCATGCCGATTTCTCTCGCGACTGCAATTTCCACTTCCACGTGTCACTCTAGGAACCCCATGATCAATAATCACCACCCCGTTATTGCATCCAACGGTGAAGGGCCCTCCTCCCCAAGCATGTCTGTTTTGACCGTTCAATCTACCACGATGGGTAACGGCTCCGTCAAAGACGCTGCTTCCGTTTCGAAGCCGTGA 1281 50.12 MQPCSREMQGLNSFLNQSQISLQDLQNDHNHHHHHHLNQPPPQPPPPQMLHHNYDPTPTSSHDDFLEQMLNTIPSSCSWPDLITKSPWDLNPIKNIPSDETPLDDSSTLASKLRTHQISPNPNSSAAKLLHQQLLMSRGIGIPEHALGLPPMPLSLGNGEIDRSQNDVAEGSCFRTPNSGGSMQAHSFGAQGGNAMNQTPGSGSAGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAGAVAPLVADVSSEGGGDCMQGNGNGNGGGNGRGSNGNQTTSSNNDSMTVTEHQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPMINNHHPVIASNGEGPSSPSMSVLTVQSTTMGNGSVKDAASVSKP 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45517757 45520272 + evm.model.ptg000008l.613 HCH8g0922 550020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0922 426 MobiDBLite consensus disorder prediction 303 332 - -
HCH8g0922 426 FunFam Transcription factor bHLH66 219 284 - -
HCH8g0922 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983(InterPro)
HCH8g0922 426 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 370 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH8g0922 426 MobiDBLite consensus disorder prediction 174 217 - -
HCH8g0922 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 281 IPR036638 GO:0046983(InterPro)
HCH8g0922 426 SMART finulus 228 277 IPR011598 GO:0046983(InterPro)
HCH8g0922 426 MobiDBLite consensus disorder prediction 174 225 - -
HCH8g0922 426 Pfam Helix-loop-helix DNA-binding domain 227 272 IPR011598 GO:0046983(InterPro)
HCH8g0922 426 Gene3D - 217 279 IPR036638 GO:0046983(InterPro)
HCH8g0922 426 MobiDBLite consensus disorder prediction 28 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1831 HCH-Chr4:47210590 HCH8g0922 HCH-Chr8:45517757 1.60E-14 dispersed
HCH5g0148 HCH-Chr5:903996 HCH8g0922 HCH-Chr8:45517757 1.20E-13 dispersed
HCH7g0703 HCH-Chr7:8516684 HCH8g0922 HCH-Chr8:45517757 4.20E-08 dispersed
HCH7g0731 HCH-Chr7:9295925 HCH8g0922 HCH-Chr8:45517757 1.50E-14 dispersed
HCH7g0833 HCH-Chr7:19648987 HCH8g0922 HCH-Chr8:45517757 5.90E-44 dispersed
HCH8g0190 HCH-Chr8:7162775 HCH8g0922 HCH-Chr8:45517757 2.40E-46 dispersed
HCH8g0922 HCH-Chr8:45517757 HCH8g1514 HCH-Chr8:49298340 4.50E-16 dispersed
HCH5g1248 HCH-Chr5:44456579 HCH8g0922 HCH-Chr8:45517757 6.80E-10 transposed
HCH8g0459 HCH-Chr8:40028731 HCH8g0922 HCH-Chr8:45517757 2.20E-12 transposed
HCH10g0304 HCH-Chr10:2496185 HCH8g0922 HCH-Chr8:45517757 2.00E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34035 PF00010 HLH 1.60E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0922 - - - 0.0