Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0924 ATGAAGCTTCTTAACCGGAAATTTTCCTTATTCAGAATCACCATGAAACATGATTGGCCAAGTATGATTTCAAATGCCAGGGTGAATACAAATGCAGAAGGTTCAGATTCAAGCTGCATCACTTTCCCGTTTCCTGCAAGTGGATGTGGCAGACAAGCTCGGAGTTTAACCTCGAAATTCAAAGGTGTTGTGCCTCAACAAAATGGCCATTGGGGTGCTCAAATATATGCGAATCACCAGCGTATTTGGCTCGGGACATTTAAGTCGGAAAAGGAAGCAGCTATGGCTTATGATAGTGCAGCTATCAGAATTAGGAGTGGAGACTGTCATAGAAACTTTCCTTGGACCGAAATCACAGTTGAAGAGCCAAACTTTCAGAAACTTTTCAGTACAGAAGCCTTGCTTTCCATGTTAAAGGATGGTTCTTACCCGACGAAATTTTCCGAGTATTTGAGGGATTTTTCTGAAACTGGACAAGTGAAAGCAATCGGTCCCTCAGCAACAAAGATTCATAGAAATGGAGGGACATCTACTAAGCAACTTTTTCAGAAGGAGCTGACACCGAGTGATGTTGGTAAGCTAAACAGGCTTGTCATTCCAAAGAAATATGCTGTTAAATACTTCCCTCACATATCAGTTAACCCCGACGAAAACAAGGAAGATGTCGGTGACGATCACGATATGCAGCTTGTATTTTACGACAAGACAATGAGGCAATGGAAATTCCGATACTGTTATTGGAAAAGCAGCCAGAGCTACGTATTTACACGAGGTTGGAACCGATTTGTGAAGGAAAAACAGCTGAAAGCAAATGACATGATAGCTTTTTACTTGTATGAAGTAGCAAAGGGAAGTGATGCTAAATCCACATTCTGCGTGGTGGATGTCAAGAACTGTGACAACGGCGGCAACTCGATAGAAATGGAGCATGAAATAAGCGAAAGAAACATCGGTCATACCGATGTCGAGATGAACGACCATAGTGAAGTTAAAGGCTTCAAACTATTTGGGGTGCATATCAAGTGA 1026 41.91 MKLLNRKFSLFRITMKHDWPSMISNARVNTNAEGSDSSCITFPFPASGCGRQARSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSAAIRIRSGDCHRNFPWTEITVEEPNFQKLFSTEALLSMLKDGSYPTKFSEYLRDFSETGQVKAIGPSATKIHRNGGTSTKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISVNPDENKEDVGDDHDMQLVFYDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDMIAFYLYEVAKGSDAKSTFCVVDVKNCDNGGNSIEMEHEISERNIGHTDVEMNDHSEVKGFKLFGVHIK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45540073 45544342 + evm.model.ptg000008l.611 HCH8g0924 550022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0924 341 SMART B3_2 182 300 IPR003340 GO:0003677(InterPro)
HCH8g0924 341 CDD B3_DNA 181 293 IPR003340 GO:0003677(InterPro)
HCH8g0924 341 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677(InterPro)
HCH8g0924 341 ProSiteProfiles B3 DNA-binding domain profile. 182 297 IPR003340 GO:0003677(InterPro)
HCH8g0924 341 Gene3D - 176 304 IPR015300 -
HCH8g0924 341 ProSiteProfiles AP2/ERF domain profile. 59 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0924 341 SUPERFAMILY DNA-binding pseudobarrel domain 179 280 IPR015300 -
HCH8g0924 341 FunFam AP2 domain-containing protein RAP2.8 58 115 - -
HCH8g0924 341 Gene3D AP2/ERF domain 58 115 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0924 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 58 339 IPR044800 GO:0003700(InterPro)
HCH8g0924 341 Pfam B3 DNA binding domain 182 280 IPR003340 GO:0003677(InterPro)
HCH8g0924 341 CDD AP2 58 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0924 341 SMART rav1_2 59 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0802 HCH-Chr1:56706788 HCH8g0924 HCH-Chr8:45540073 4.10E-45 dispersed
HCH8g0487 HCH-Chr8:41117571 HCH8g0924 HCH-Chr8:45540073 2.00E-90 dispersed
HCH8g0924 HCH-Chr8:45540073 HCH14g0961 HCH-Chr14:37078258 2.10E-08 dispersed
HCH8g0924 HCH-Chr8:45540073 HCH10g1245 HCH-Chr10:44281681 8.20E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34036 PF02362 B3 2.10E-25 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0924 K09287 - csv:101212246 503.442