Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0925 ATGTCGGAAAAAGACAGAGACGTAAATTCCAGCATCCTTCATGGAAAATACGAATTGGGTCGGCTTCTCGGGCACGGTACTTTCGCTAAAGTATACCATGCCCGGAACTTGCTGACCGGAAAAAACATGGCTATGAAAATCGTCGGAAAAGAAAAGGTAATAAAAGTAGGAATGATGGAGCAAATCAAGAGAGAGATTTCAGTTATGAAAATGGTGAAGCATCCCAATATCGTCGAGCTTCATGAAGTTATGGCGAGCAAATCGAAAATCTATTTCTCCATGGAGCTTGTTCGTGGCGGCGAGCTTTTCTCTAAAATTTCCAAAGGTCGGTTAAGAGAAGATTTGGCGAGAGTTTATTTTCAGCAGCTGATTTCCGCGGTTGATTTCTGCCACAGTCGCGGTGTTTTTCATAGAGATTTAAAACCGGAGAATCTTCTTCTTGATGATGACGGGAATTTGAAAGTTACCGATTTCGGTCTCAGTGCTTTCACTGAGCATTTGAAGCAAGATGGATTGTTGCATACTACTTGTGGAACTCCAGCTTACGTGGCGCCTGAAGTTATCGGGAAGAAAGGATACGACGGTGCTAAAGCTGATTTATGGTCTTGCGGTGTTATTCTTTACGTGCTTCTCGCAGGGTTTCTTCCATTTCAAGATGATAATATCGTGGCGATGTATAGAAAGATTTATCGGGGAGATTTCAAATGCCCGCCATGGTTTTCACCGGAAGCTCGGCGTTTGGTGACGAAACTTCTGGATCCGAATCCGGGGACAAGGATTACGACGTCGAAGATAATGGAATCGTCGTGGTTTAGGAAATCGGTTCCGAGGAGTATGAGAAGTAAGGAGGACGAAAGTGAGGAGAGTAATGAGAAGTGGAAGCAGCCGGAGACATTGAATGCTTTTCATATAATTTCGCTGTCGGAAGGGTTTGATTTGTCACCGTTGTTCGAGGAGAAGAAGAGGGAGGAGAAGGAGGAGATGAGATTTGCGACGACGAGGCCGGCGAGTAGCGTGATATCGAAGTTGGAGGAGGTGGCGAAGGCCGGGAAGTTTAATGTGAAGAAGAGCGAGTCTAGGGTTAGGTTGCAAGGGCAAGTGTGTGGGAGGAAAGGGAAACTGGCGGTGGCGGCGGAGATTTTCGTCCTCACGCCGTCGTTTTTAGTGGTGGAGGTGAAGAAAGATCATGGTGATACACTCGAGTACAATCAGTTCTGCAGTAAGGAGCTTCGGCCGGCGTTGAAAGACATCGTTTGGACGTCGCCGGCGTGA 1272 46.62 MSEKDRDVNSSILHGKYELGRLLGHGTFAKVYHARNLLTGKNMAMKIVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFSMELVRGGELFSKISKGRLREDLARVYFQQLISAVDFCHSRGVFHRDLKPENLLLDDDGNLKVTDFGLSAFTEHLKQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADLWSCGVILYVLLAGFLPFQDDNIVAMYRKIYRGDFKCPPWFSPEARRLVTKLLDPNPGTRITTSKIMESSWFRKSVPRSMRSKEDESEESNEKWKQPETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATTRPASSVISKLEEVAKAGKFNVKKSESRVRLQGQVCGRKGKLAVAAEIFVLTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45556791 45558062 - evm.model.ptg000008l.610 HCH8g0925 550023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0925 423 Gene3D Transferase(Phosphotransferase) domain 1 97 297 - -
HCH8g0925 423 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0925 423 Pfam NAF domain 296 356 IPR004041 GO:0007165(InterPro)
HCH8g0925 423 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
HCH8g0925 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0925 423 SUPERFAMILY Protein kinase-like (PK-like) 13 281 IPR011009 -
HCH8g0925 423 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0925 423 FunFam Non-specific serine/threonine protein kinase 294 419 - -
HCH8g0925 423 Gene3D Phosphorylase Kinase; domain 1 10 96 - -
HCH8g0925 423 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 414 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH8g0925 423 ProSiteProfiles NAF domain profile. 294 318 IPR018451 GO:0007165(InterPro)
HCH8g0925 423 FunFam Non-specific serine/threonine protein kinase 7 297 - -
HCH8g0925 423 Gene3D Kinase associated domain 1, KA1 298 420 - -
HCH8g0925 423 CDD CIPK_C 300 415 - -
HCH8g0925 423 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0925 423 FunFam Non-specific serine/threonine protein kinase 8 96 - -
HCH8g0925 423 CDD STKc_SnRK3 16 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0925 HCH-Chr8:45556791 HCH9g0825 HCH-Chr9:5774557 6.60E-145 dispersed
HCH10g0306 HCH-Chr10:2517667 HCH8g0925 HCH-Chr8:45556791 1.60E-199 wgd
HCH12g0412 HCH-Chr12:2388446 HCH8g0925 HCH-Chr8:45556791 2.70E-136 wgd
HCH6g0291 HCH-Chr6:4133601 HCH8g0925 HCH-Chr8:45556791 2.20E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81711 PF00069 Pkinase 1.60E-72 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0925 - - - 0.0