Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0927 ATGGCGTTGCTGCGCAAATTGTTCTTTCGTAAACCACCTGATGGCCTTCTTGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGCTTTACCACGGATGCTTGGAAGGAAGAGAACTATACAGTTTACTTAGATGGGATAGTCACTCAGCTCCAAGAACATTTAGCAGATGCTTCATTCCTGGTATTCAATTTTCGGCAACTAGAGAAGCAAAGTCAGATGGGTGATCTCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCGGTTCTGTCAATGGAAGTGATCCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGCATAATGTGTTGTTAATGCACTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCTGCTCTCTTGATTTATAGGAAGCAATATAGTGGTGAGCAGAGGACCTTGGACATGGTTTATAGGCAGGCACCTCGTGAGCTTTTGCATCTCTTGTCTTCTATAAATCCAATCCCTTCTCAATTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGTCTTAGAATGGCCTCCCATGGACCGAGCCCTCACCTTGGATTGTATCATTCTGAGATTTATACCAAATTTTGATGGAGAGGGAGGTTGCCGCCCAATATTTCGAATATATGGACAGGATCCACTCCTTGTGAGTGATCGAACTCCTAAAGTTCTGTTTTCAACTCCAAAAAGAAGCAAAAATGTTCGTCATTACAAACAGGCAGAATCAGAACTGGTTAAAATTGATATTAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCACCTTGCATGATGACATGGAATCTGAAGAGCTGATGTTCAGAGTAATGTTTAACACAGCTTTTATTCGGTCTAATATCTTAATTCTGAACCGTGAAGAGATTTGCAAATCGTGGAATGCTAGAGATCAATTTCCAAAGGACTTTCGGGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAGCATGTGTTGTTGTAAGCGATGTCCTTTGCTTTGACGAGGAGGGTCTTCCCATGGAAGCATTTGCTAAAGTCCAAGAGATCTTTAGCCATGTTGATTGGTTAGACCCCAAAGCAGATGCTGCCCTTAATGTGCTCCAGCAGATGGGTGCCTTAAATATGTCCCAAGAAAAGTTAGACAACAATTCTCTTTGGAATGTGCATGTTAGTCCTTTATTGCAGTGTACAAGTCCCAGAAAACTTCAGCAGAAGAAAACTAAAATCCTAGAGAAAGAACAATCATCCCCAACTTCTAAATTTTCCCATGATGCTGCTAAAAGTGAACAAAACAATGAATACAAAGCTATCGAAATTCTAGATCCAGCCTCGACTGTTTCGCTTACACCTGAATCTCTTCAGGCTGAAATTGGCCTAAAAGAACCAACAACACCACCCCTTCCCCTCCCTAAACTTTCCACTATTATATCTTCTGCTGACTCTCTGGCTTCTCCTCCCCCTCCTCCAACCCCACCACCATTGCTATCTAATTCGCCTTCTCTGTCAGCAAGCTCTGCAATTTATTCTTCAGCGCAGTCTTCTCATTCATCTCCCCTCCCATTATCTCCTTCTACACCACCTGTGGAGGAAAATATAGCTGATAGAGTTAAACCTTCTCCACCAACACGCTTTGTTCCTCCAACACCACCTTCTGGTCCTAAAATTACATCTTTAGTGCCTCCTCCACCACCACCTCCTCCTTCAATCTCCACTGCAGTGCCTCAGCCCCCACCACCACCTCCTCCTTCAATCCCCACTGCAGTGCCTCAGCCCCCACCACCACCTTCTCTTCCTTCAACACCAGCTTTTGGTCCTGGAAGTGTATCTTTAGTGCCTCCACCACCACCACCTCCTACTCCAGTGCCTCGGCCATCACCACCACCTCCTCCCCCTCCTCCAGTGTCCTCAGCAAATCCTAAAATTTCATCTTCTATGCCTCCACCACCACCACCTCCCCTTCCTATGACATCCAGACAGGTTGGAAATACTTCAACATCATCTCCATCAGTTCCTCCTCCACCACCACCACCTGCCTCCACTACAGGCTCCTCTATACCTGTTCCTTCTGCACCCCCTCCTCCCGCCCCTTTTGCCAAAGGGAAATCAAAGTCTGGTGACTCAGTTCCGAGTTCTCTTCATGGAAATGGCTCATCTAAGTCTTCCTCTCCAGCGCCACCGAGTGGTTCTCCATTTGCAAAAGGCCGTAGTTTGTCACGAACTATAAGTTCAAGAATGCATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTACAAGGAAGCTTATGGGCTGAAGCTCAAAAATCTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCAGCAGTTCCGGCCTCTGATCAGCACAAGAAATCAAGTGCACGCAGTTCAGTTGGGACTAAACCTGATAAAATTCAACTGATTGATCACAGACGAGCATACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCATGACTTAATGAGTTCTGTGCTTGACCTTGAAGATTCACAATTGGATATTGATCAGGTTGAGAACCTTATTAAGTTTTGCCCCACAAAGGAGGAAATGGAATTACTCAAGGGCTATACTGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTTTTCTTAGTACTAATGCAAGTACCTCGTGTAGAAACTAAACTTCGTGTCTTCTCATTCAAGATACAGTTCCATTCTCAGGTTTCTGATCTTAAAAAAAGCCTAAACTTTGTTAACTCTGCTGCGGAAGAGATAAAAAATTCAGTCAAATTGAAGAGAATCATGCAGACAATCCTCTCTCTAGGAAATGCTTTGAACCAGGGAACAGCAAGGGGCTCGGCTATTGGATTTAGGCTGGATAGCCTTCTTAAATTAACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTGGCTGACAAACTGCCAGAAGTTTTAGACTTTTCTAAAGATCTTGCGAGCCTGGAGCCCGCATCAAAGGTACAATTGAAAGCTTTGGCAGAGGAAATGCAAGCAGTAAGCAAGGGGTTGGAGAAAGTCATTCAAGAACTGGCTGCCTCTGAAAATGATGGCCCTATATCTGATAACTTCCGTAAGATATTGAAGGGGTTCCTTCGTTTTGCTGAAGCTGAAGTAAGGACTTTGGCTTCACTTTACTCGGGCGTGGGTAGAAATGTAGATTCGTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTCGAACAAGTTATTTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCATGAGGAAAACTGCAAGCAGCTTGAGCTTGAAAGGAAGAAAGCAACTGAAAGCGAGAAATCAAAGACGGGACACTTGCACAAGGGGACTGAACAATTGTCACATTCCCATATCCAGATTGGCAATGTCAAGTGA 3543 43.89 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWKEENYTVYLDGIVTQLQEHLADASFLVFNFRQLEKQSQMGDLLSKYDMTIMDYPQQYEGCPVLSMEVIHHFLRSCESWLSLGQHNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHLLSSINPIPSQLRYLQYVARRNVVLEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLFSTPKRSKNVRHYKQAESELVKIDINCHIQGDVVLECITLHDDMESEELMFRVMFNTAFIRSNILILNREEICKSWNARDQFPKDFRAEILFSEMDAGACVVVSDVLCFDEEGLPMEAFAKVQEIFSHVDWLDPKADAALNVLQQMGALNMSQEKLDNNSLWNVHVSPLLQCTSPRKLQQKKTKILEKEQSSPTSKFSHDAAKSEQNNEYKAIEILDPASTVSLTPESLQAEIGLKEPTTPPLPLPKLSTIISSADSLASPPPPPTPPPLLSNSPSLSASSAIYSSAQSSHSSPLPLSPSTPPVEENIADRVKPSPPTRFVPPTPPSGPKITSLVPPPPPPPPSISTAVPQPPPPPPPSIPTAVPQPPPPPSLPSTPAFGPGSVSLVPPPPPPPTPVPRPSPPPPPPPPVSSANPKISSSMPPPPPPPLPMTSRQVGNTSTSSPSVPPPPPPPASTTGSSIPVPSAPPPPAPFAKGKSKSGDSVPSSLHGNGSSKSSSPAPPSGSPFAKGRSLSRTISSRMHITKKLKPLHWLKLSKAVQGSLWAEAQKSGEAARAPEIDMSELESLFSAAVPASDQHKKSSARSSVGTKPDKIQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSQLDIDQVENLIKFCPTKEEMELLKGYTGEKEKLGKCEQFFLVLMQVPRVETKLRVFSFKIQFHSQVSDLKKSLNFVNSAAEEIKNSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKALAEEMQAVSKGLEKVIQELAASENDGPISDNFRKILKGFLRFAEAEVRTLASLYSGVGRNVDSLILYFGEDPARCPFEQVISTLCNFVRMFNRAHEENCKQLELERKKATESEKSKTGHLHKGTEQLSHSHIQIGNVK 1180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45586913 45596098 - evm.model.ptg000008l.608 HCH8g0927 550025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0927 1180 Gene3D - 198 340 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 424 447 - -
HCH8g0927 1180 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
HCH8g0927 1180 Gene3D Formin, FH2 domain 758 1144 IPR042201 -
HCH8g0927 1180 Pfam Formin Homology 2 Domain 767 1134 IPR015425 -
HCH8g0927 1180 Gene3D Protein tyrosine phosphatase superfamily 15 197 IPR029021 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 814 834 - -
HCH8g0927 1180 ProSiteProfiles Formin homology-2 (FH2) domain profile. 760 1159 IPR015425 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 1147 1168 - -
HCH8g0927 1180 SMART it6_source 478 1178 IPR015425 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 501 515 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 723 757 - -
HCH8g0927 1180 Coils Coil 1134 1154 - -
HCH8g0927 1180 SMART PTEN_C2_2 197 337 IPR014020 -
HCH8g0927 1180 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
HCH8g0927 1180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 516 538 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 497 757 - -
HCH8g0927 1180 Coils Coil 1040 1060 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 559 675 - -
HCH8g0927 1180 SUPERFAMILY Formin homology 2 domain (FH2 domain) 691 1151 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 818 832 - -
HCH8g0927 1180 PANTHER FORMIN-J 1 617 IPR051144 -
HCH8g0927 1180 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 686 717 - -
HCH8g0927 1180 PRINTS Proline rich extensin signature 498 510 - -
HCH8g0927 1180 PRINTS Proline rich extensin signature 597 613 - -
HCH8g0927 1180 PRINTS Proline rich extensin signature 557 569 - -
HCH8g0927 1180 PRINTS Proline rich extensin signature 575 596 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 1147 1180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0927 K28090 - - vvi:100249846 1236.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0222 HCH-Chr5:1265054 HCH8g0927 HCH-Chr8:45586913 3.60E-247 dispersed
HCH8g0927 HCH-Chr8:45586913 HCH8g1276 HCH-Chr8:47946284 4.90E-230 dispersed
HCH12g0414 HCH-Chr12:2400867 HCH8g0927 HCH-Chr8:45586913 6.2e-312 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33