Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0927 ATGGCGTTGCTGCGCAAATTGTTCTTTCGTAAACCACCTGATGGCCTTCTTGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGCTTTACCACGGATGCTTGGAAGGAAGAGAACTATACAGTTTACTTAGATGGGATAGTCACTCAGCTCCAAGAACATTTAGCAGATGCTTCATTCCTGGTATTCAATTTTCGGCAACTAGAGAAGCAAAGTCAGATGGGTGATCTCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCGGTTCTGTCAATGGAAGTGATCCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGCATAATGTGTTGTTAATGCACTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCTGCTCTCTTGATTTATAGGAAGCAATATAGTGGTGAGCAGAGGACCTTGGACATGGTTTATAGGCAGGCACCTCGTGAGCTTTTGCATCTCTTGTCTTCTATAAATCCAATCCCTTCTCAATTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGTCTTAGAATGGCCTCCCATGGACCGAGCCCTCACCTTGGATTGTATCATTCTGAGATTTATACCAAATTTTGATGGAGAGGGAGGTTGCCGCCCAATATTTCGAATATATGGACAGGATCCACTCCTTGTGAGTGATCGAACTCCTAAAGTTCTGTTTTCAACTCCAAAAAGAAGCAAAAATGTTCGTCATTACAAACAGGCAGAATCAGAACTGGTTAAAATTGATATTAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCACCTTGCATGATGACATGGAATCTGAAGAGCTGATGTTCAGAGTAATGTTTAACACAGCTTTTATTCGGTCTAATATCTTAATTCTGAACCGTGAAGAGATTTGCAAATCGTGGAATGCTAGAGATCAATTTCCAAAGGACTTTCGGGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAGCATGTGTTGTTGTAAGCGATGTCCTTTGCTTTGACGAGGAGGGTCTTCCCATGGAAGCATTTGCTAAAGTCCAAGAGATCTTTAGCCATGTTGATTGGTTAGACCCCAAAGCAGATGCTGCCCTTAATGTGCTCCAGCAGATGGGTGCCTTAAATATGTCCCAAGAAAAGTTAGACAACAATTCTCTTTGGAATGTGCATGTTAGTCCTTTATTGCAGTGTACAAGTCCCAGAAAACTTCAGCAGAAGAAAACTAAAATCCTAGAGAAAGAACAATCATCCCCAACTTCTAAATTTTCCCATGATGCTGCTAAAAGTGAACAAAACAATGAATACAAAGCTATCGAAATTCTAGATCCAGCCTCGACTGTTTCGCTTACACCTGAATCTCTTCAGGCTGAAATTGGCCTAAAAGAACCAACAACACCACCCCTTCCCCTCCCTAAACTTTCCACTATTATATCTTCTGCTGACTCTCTGGCTTCTCCTCCCCCTCCTCCAACCCCACCACCATTGCTATCTAATTCGCCTTCTCTGTCAGCAAGCTCTGCAATTTATTCTTCAGCGCAGTCTTCTCATTCATCTCCCCTCCCATTATCTCCTTCTACACCACCTGTGGAGGAAAATATAGCTGATAGAGTTAAACCTTCTCCACCAACACGCTTTGTTCCTCCAACACCACCTTCTGGTCCTAAAATTACATCTTTAGTGCCTCCTCCACCACCACCTCCTCCTTCAATCTCCACTGCAGTGCCTCAGCCCCCACCACCACCTCCTCCTTCAATCCCCACTGCAGTGCCTCAGCCCCCACCACCACCTTCTCTTCCTTCAACACCAGCTTTTGGTCCTGGAAGTGTATCTTTAGTGCCTCCACCACCACCACCTCCTACTCCAGTGCCTCGGCCATCACCACCACCTCCTCCCCCTCCTCCAGTGTCCTCAGCAAATCCTAAAATTTCATCTTCTATGCCTCCACCACCACCACCTCCCCTTCCTATGACATCCAGACAGGTTGGAAATACTTCAACATCATCTCCATCAGTTCCTCCTCCACCACCACCACCTGCCTCCACTACAGGCTCCTCTATACCTGTTCCTTCTGCACCCCCTCCTCCCGCCCCTTTTGCCAAAGGGAAATCAAAGTCTGGTGACTCAGTTCCGAGTTCTCTTCATGGAAATGGCTCATCTAAGTCTTCCTCTCCAGCGCCACCGAGTGGTTCTCCATTTGCAAAAGGCCGTAGTTTGTCACGAACTATAAGTTCAAGAATGCATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTACAAGGAAGCTTATGGGCTGAAGCTCAAAAATCTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCAGCAGTTCCGGCCTCTGATCAGCACAAGAAATCAAGTGCACGCAGTTCAGTTGGGACTAAACCTGATAAAATTCAACTGATTGATCACAGACGAGCATACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCATGACTTAATGAGTTCTGTGCTTGACCTTGAAGATTCACAATTGGATATTGATCAGGTTGAGAACCTTATTAAGTTTTGCCCCACAAAGGAGGAAATGGAATTACTCAAGGGCTATACTGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTTTTCTTAGTACTAATGCAAGTACCTCGTGTAGAAACTAAACTTCGTGTCTTCTCATTCAAGATACAGTTCCATTCTCAGGTTTCTGATCTTAAAAAAAGCCTAAACTTTGTTAACTCTGCTGCGGAAGAGATAAAAAATTCAGTCAAATTGAAGAGAATCATGCAGACAATCCTCTCTCTAGGAAATGCTTTGAACCAGGGAACAGCAAGGGGCTCGGCTATTGGATTTAGGCTGGATAGCCTTCTTAAATTAACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTGGCTGACAAACTGCCAGAAGTTTTAGACTTTTCTAAAGATCTTGCGAGCCTGGAGCCCGCATCAAAGGTACAATTGAAAGCTTTGGCAGAGGAAATGCAAGCAGTAAGCAAGGGGTTGGAGAAAGTCATTCAAGAACTGGCTGCCTCTGAAAATGATGGCCCTATATCTGATAACTTCCGTAAGATATTGAAGGGGTTCCTTCGTTTTGCTGAAGCTGAAGTAAGGACTTTGGCTTCACTTTACTCGGGCGTGGGTAGAAATGTAGATTCGTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTCGAACAAGTTATTTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCATGAGGAAAACTGCAAGCAGCTTGAGCTTGAAAGGAAGAAAGCAACTGAAAGCGAGAAATCAAAGACGGGACACTTGCACAAGGGGACTGAACAATTGTCACATTCCCATATCCAGATTGGCAATGTCAAGTGA 3543 43.89 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWKEENYTVYLDGIVTQLQEHLADASFLVFNFRQLEKQSQMGDLLSKYDMTIMDYPQQYEGCPVLSMEVIHHFLRSCESWLSLGQHNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHLLSSINPIPSQLRYLQYVARRNVVLEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLFSTPKRSKNVRHYKQAESELVKIDINCHIQGDVVLECITLHDDMESEELMFRVMFNTAFIRSNILILNREEICKSWNARDQFPKDFRAEILFSEMDAGACVVVSDVLCFDEEGLPMEAFAKVQEIFSHVDWLDPKADAALNVLQQMGALNMSQEKLDNNSLWNVHVSPLLQCTSPRKLQQKKTKILEKEQSSPTSKFSHDAAKSEQNNEYKAIEILDPASTVSLTPESLQAEIGLKEPTTPPLPLPKLSTIISSADSLASPPPPPTPPPLLSNSPSLSASSAIYSSAQSSHSSPLPLSPSTPPVEENIADRVKPSPPTRFVPPTPPSGPKITSLVPPPPPPPPSISTAVPQPPPPPPPSIPTAVPQPPPPPSLPSTPAFGPGSVSLVPPPPPPPTPVPRPSPPPPPPPPVSSANPKISSSMPPPPPPPLPMTSRQVGNTSTSSPSVPPPPPPPASTTGSSIPVPSAPPPPAPFAKGKSKSGDSVPSSLHGNGSSKSSSPAPPSGSPFAKGRSLSRTISSRMHITKKLKPLHWLKLSKAVQGSLWAEAQKSGEAARAPEIDMSELESLFSAAVPASDQHKKSSARSSVGTKPDKIQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSQLDIDQVENLIKFCPTKEEMELLKGYTGEKEKLGKCEQFFLVLMQVPRVETKLRVFSFKIQFHSQVSDLKKSLNFVNSAAEEIKNSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKALAEEMQAVSKGLEKVIQELAASENDGPISDNFRKILKGFLRFAEAEVRTLASLYSGVGRNVDSLILYFGEDPARCPFEQVISTLCNFVRMFNRAHEENCKQLELERKKATESEKSKTGHLHKGTEQLSHSHIQIGNVK 1180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45586913 45596098 - evm.model.ptg000008l.608 HCH8g0927 550025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0927 1180 Gene3D - 198 340 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 424 447 - -
HCH8g0927 1180 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
HCH8g0927 1180 Gene3D Formin, FH2 domain 758 1144 IPR042201 -
HCH8g0927 1180 Pfam Formin Homology 2 Domain 767 1134 IPR015425 -
HCH8g0927 1180 Gene3D Protein tyrosine phosphatase superfamily 15 197 IPR029021 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 814 834 - -
HCH8g0927 1180 ProSiteProfiles Formin homology-2 (FH2) domain profile. 760 1159 IPR015425 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 1147 1168 - -
HCH8g0927 1180 SMART it6_source 478 1178 IPR015425 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 501 515 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 723 757 - -
HCH8g0927 1180 Coils Coil 1134 1154 - -
HCH8g0927 1180 SMART PTEN_C2_2 197 337 IPR014020 -
HCH8g0927 1180 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
HCH8g0927 1180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 516 538 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 497 757 - -
HCH8g0927 1180 Coils Coil 1040 1060 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 559 675 - -
HCH8g0927 1180 SUPERFAMILY Formin homology 2 domain (FH2 domain) 691 1151 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 818 832 - -
HCH8g0927 1180 PANTHER FORMIN-J 1 617 IPR051144 -
HCH8g0927 1180 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 686 717 - -
HCH8g0927 1180 PRINTS Proline rich extensin signature 498 510 - -
HCH8g0927 1180 PRINTS Proline rich extensin signature 597 613 - -
HCH8g0927 1180 PRINTS Proline rich extensin signature 557 569 - -
HCH8g0927 1180 PRINTS Proline rich extensin signature 575 596 - -
HCH8g0927 1180 MobiDBLite consensus disorder prediction 1147 1180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0222 HCH-Chr5:1265054 HCH8g0927 HCH-Chr8:45586913 3.60E-247 dispersed
HCH8g0927 HCH-Chr8:45586913 HCH8g1276 HCH-Chr8:47946284 4.90E-230 dispersed
HCH12g0414 HCH-Chr12:2400867 HCH8g0927 HCH-Chr8:45586913 6.2e-312 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0927 K28090 - vvi:100249846 1236.48