Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0932 ATGGCTGAGCGCGAAGAAGAAGAAGAAGAAGAGATGGAAGAATCAGAGGATGAATCTGAAGTCCACGTGGACGGTGGAGATGGACGGGTGAGGGAGTCTAGTTTTGAAACCCTAGCGGCGCCTTCTGATGGTTTGCTTGTTAATTCTGATTCGCAGTTGATTCAAGGAGCTGAATTGGAGGAACAAGTTCCAGTTTCCTGCAATGAACCTTTGACCATTGTACCGATCCAGGCAGATCAGTTGCAAGAACAAAGTCAACTTCAGTCGTCCACATGTCAAAAACCTGCATCGGAACAATCACCAACTTCAGTTACGCAGTCTATCTCATCCTCTGCAAGCCCAAGTGTATCCGAACATAAACCGTCACCTAGGAAGGTCCATAATGAATGTAAGCCAGAACCAAGCCAGAAAAATTCTTCAGACCATAAAACTGGATCTTCTGTTCCCAATGTGAGGACATCTGCTTCTGATGGTTATAATTGGAGGAAATATGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCTCGTAGCTATTATAAGTGTACATACTCTGAATGTTGTGCTAAGAAGATTGAGTGTTGTGATCACTCCGGCCTTGTAACAGAGATTGTATACAAAAGCCAGCATAGCCATGATCCACCTAGGAAGATTAAGGAAAGTAAGCTTGTGCCATATGCTGAGCCAGTTGTGAAAAAAATTATTGCAGAACATTCCAGAAGAGTAATAAATGACTCAGATCCTTCAACGTCTTCAAAAGAACCTCTACGAGAAGCACCTTCGGTCCCTGAAAGAAAACGACAGTACTCAAATGACTCTGATCAAAATGATGAAGCTAAAATCAAGGATGAGAATGTCAATGAACCTGAGCCAAAACATAAAGTTAAGAAAAGCAGTACAGAGCATTCAGGTACTCCCGTAAAACCTGGCAAGAAACCCAAATTTGTGGTACATGCAGCTGGTGATGTGGGAATCTCAGGTGATGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGGAATCCTCATCCTAGGAACTACTACAGATGTACTTCTGCTGGATGTCCTGTCCGTAAGCATATTGAATCAGCTGTAGATAATCCAAATGCAGTGATTATAACCTACAAGGGAATTCATGATCATGATACGCCGGTACCAAAGAAACGACACGGTCCACCGAGTGCTCCTCTTGTAGCTGCTGCAGCTCCAGCGTCCATGAACAATATGCAATCAAAGAAAACAGACACTATCCAGAACCAAATCTCTTCAACACAATGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGACCTTGGAGGTGAGAAGGCAATGGAATCTGCTAGAACTCTTTTAAGCATTGGATTTGAAATCAAACCCTGCTGA 1395 43.51 MAEREEEEEEEMEESEDESEVHVDGGDGRVRESSFETLAAPSDGLLVNSDSQLIQGAELEEQVPVSCNEPLTIVPIQADQLQEQSQLQSSTCQKPASEQSPTSVTQSISSSASPSVSEHKPSPRKVHNECKPEPSQKNSSDHKTGSSVPNVRTSASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGLVTEIVYKSQHSHDPPRKIKESKLVPYAEPVVKKIIAEHSRRVINDSDPSTSSKEPLREAPSVPERKRQYSNDSDQNDEAKIKDENVNEPEPKHKVKKSSTEHSGTPVKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVDNPNAVIITYKGIHDHDTPVPKKRHGPPSAPLVAAAAPASMNNMQSKKTDTIQNQISSTQWSVDAEGELTGEALDLGGEKAMESARTLLSIGFEIKPC 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45626758 45630023 + evm.model.ptg000008l.603 HCH8g0932 550030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0932 464 MobiDBLite consensus disorder prediction 81 118 - -
HCH8g0932 464 ProSiteProfiles WRKY domain profile. 156 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g0932 464 MobiDBLite consensus disorder prediction 81 177 - -
HCH8g0932 464 MobiDBLite consensus disorder prediction 1 21 - -
HCH8g0932 464 SUPERFAMILY WRKY DNA-binding domain 321 385 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g0932 464 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 408 IPR044810 GO:0003700(InterPro)
HCH8g0932 464 Coils Coil 2 22 - -
HCH8g0932 464 ProSiteProfiles WRKY domain profile. 320 385 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g0932 464 MobiDBLite consensus disorder prediction 1 47 - -
HCH8g0932 464 FunFam WRKY transcription factor 311 386 - -
HCH8g0932 464 Pfam WRKY DNA -binding domain 327 383 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g0932 464 Pfam WRKY DNA -binding domain 157 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g0932 464 MobiDBLite consensus disorder prediction 120 138 - -
HCH8g0932 464 Gene3D WRKY domain 143 215 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g0932 464 Gene3D WRKY domain 310 386 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g0932 464 SMART WRKY_cls 155 213 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g0932 464 SMART WRKY_cls 325 384 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g0932 464 MobiDBLite consensus disorder prediction 237 312 - -
HCH8g0932 464 MobiDBLite consensus disorder prediction 257 300 - -
HCH8g0932 464 MobiDBLite consensus disorder prediction 139 161 - -
HCH8g0932 464 SUPERFAMILY WRKY DNA-binding domain 154 214 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0326 HCH-Chr7:2339749 HCH8g0932 HCH-Chr8:45626758 1.30E-42 dispersed
HCH8g0932 HCH-Chr8:45626758 HCH8g1315 HCH-Chr8:48154728 9.80E-17 dispersed
HCH8g0932 HCH-Chr8:45626758 HCH1g0893 HCH-Chr1:57396564 9.80E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34037 PF03106 WRKY 7.50E-24 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0932 - - - 0.0