Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0947 ATGCAGAAAACTGATCAAACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGTGGTAGACTCCTTGGTCATTCTTCATCTTCTTCTTCTTCTTCTTCCTCCTTCGCTTTCGGTTCTTTTTCCTCTGATCTCCGTCCCCATACCTCTGCTCCCTCTCCTTTTCCTTTAAAGAGTGGAGGAGATTCACGGTTTGAGAATCGTGACCGTGTTCGTTTTACTCGTGATCAGCTTTTACATCTCCGTGAGGTTGGGGAAGTTCCGGAAGATATACTGAAACTTAAACGAGATATTGAAGTTGAATTTTTCGGTGAGGATCAAAATTGGAGTCATGGCGAGAGCAATGCCAATCAACCTAATCAATCCCAGAGTCGGTATTCTGAGCCAGACAATCGAAACTGGCGTGGCCGTTCTGCACAAGTTTCTGCTTCTGGAGAGGAGAGGTCCAGAGAAACATTTCGAGATAGAGAGTTTGGTGGTCATTTCGACTCTAGAATGCAGGAAGCGAATCAATTGAATCGTCAAGACTCACAATCGACCTGGACCCACACCTCTTCTCACCAAGGGGGAGGACCTCCTGCTTTAATCAAAGCTGATGTACCGTGGTCAGTTAGGAGGGGAACTCTCTCTGACAAGGATCGTGTCTTGAAGACTGTTAAGGGGATATTGAACAAACTAACACCAGAAAAGTTTGATCTGCTCAAGGGTCAACTAATTGACTCTGGAATCACCTCTGCTGATATTTTGAAGGATGTCATTTCACTGATCTTTGACAAAGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTGTGTTCTGATCTTAATGAGAAGCTACCTCAATTCCCATCTGATGAACCTGGTGGAAGGGAAATTACGTTTAAACGAGTTCTCTTAAACATCTGCCAGGAGGCTTTTGAAGAAATGAGGCAGATGACTGCCCCTGAGCAAGAGATGGAGCGCAGGGATAAAGAAAGACTGATGAAACTTCGGACCCTTGGAAATATTCGATTGATTGGGGAGCTTCTGAAGCAAAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTGCAGGAACTCTTAGGATCTGACAACAAAATCTGTCCTGCTGAAGAAAATGTTGAGGCCATCTGTCAGTTCTTTAACACTATAGGTAAGCAGCTAGATGAGAACACAAAAGCACGCCGTATAAATGATACATACTTTACCCGATTGAAGGAACTGATAACACACTCCCAGTTGGCCCCACGATTGAAGTTCATGATTCAAGATGTGCTTGATTTGCGTGCCAACAAATGGATTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATTCAGAGGCAGAAAAAACTCTGGGACTACGTCCTGGTGCTACAATAAATATAAGAAGTAGTCGTGGCTTTGTGTCTGATTCTACAGGGAATACCAGCCCTGGAGGCTTTCCTATTAATCAAACTGGTTTTGGGGGTATGATGCCTGGCATGCCAAACAGGAAGATGCCCGGTATGCCAGGAATCGATAATGACAATTGGGAGGTACCTAGGACTCGGTCTATATCAAGGGGAACTGGATCTGGTATTCAACCTGCTGGTCGTGGCCAAACACCATTGGTTGGCAAAGCGTCCTTATCAAATGCAAGACTATTACCCCAAGGTACTGGAGGGCACATTACTAACAAGACTAGTGCCCTATTGCAGGGTGCTAGTGCATCTACTACCCGTCCCATTAACGTCAGTCATGGTTTGGAGCCTTCTGCATATGGTCAGAAACCTGTTATGGCACCAATAGCTGTCCAGGTTGTGGATAGACCACAGGTTCCAGCTATAACTTTGAATCAAGATGATCTTAGAAAGAAAACTATTTCTCTTCTTGAAGAATATTTCAGTGTGCGGCTTTTGGATGAGGCTTTACAGTGTGTGGAAGAACTTAAATCACCAGCTTACCACCCTGAGGTTGTGAAGGAAGCCATTTCCCTAGCCCTAGAGAAAAGTCCACCTTGTGTTGAAGCCGTTGTAAAGCTTCTGGAATATTTACTTGCCAAGAAGGTTTTTACAGCTAGAGACATTGGGACTGGATGCTTGCTATATGCTTCTATGATTGATGATATTGGCATTGATTTACCTAAAGCACCAAACAATTTTGGTGAGATTACTGGGAAACTTGTTATTTCTGGTGGTTTGAATTTTCAGGTGGTGAAGGAGGTCCTTAAGAAGGTGGAAGATGACCTATTCAGGAAACTTATATTTGATGGTGTCTTGAGGACGGTTAGTTCTAATTCGTCTGGGCAAGGATTATTGGATTCATTTGCATCTGATATCGAGGCTTGTCGAAGTCTGGCATCTTAA 2358 43.89 MQKTDQTVLSLRPGGGRGRLLGHSSSSSSSSSSFAFGSFSSDLRPHTSAPSPFPLKSGGDSRFENRDRVRFTRDQLLHLREVGEVPEDILKLKRDIEVEFFGEDQNWSHGESNANQPNQSQSRYSEPDNRNWRGRSAQVSASGEERSRETFRDREFGGHFDSRMQEANQLNRQDSQSTWTHTSSHQGGGPPALIKADVPWSVRRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPQFPSDEPGGREITFKRVLLNICQEAFEEMRQMTAPEQEMERRDKERLMKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSDNKICPAEENVEAICQFFNTIGKQLDENTKARRINDTYFTRLKELITHSQLAPRLKFMIQDVLDLRANKWIPRREEVKAKTITEIHSEAEKTLGLRPGATINIRSSRGFVSDSTGNTSPGGFPINQTGFGGMMPGMPNRKMPGMPGIDNDNWEVPRTRSISRGTGSGIQPAGRGQTPLVGKASLSNARLLPQGTGGHITNKTSALLQGASASTTRPINVSHGLEPSAYGQKPVMAPIAVQVVDRPQVPAITLNQDDLRKKTISLLEEYFSVRLLDEALQCVEELKSPAYHPEVVKEAISLALEKSPPCVEAVVKLLEYLLAKKVFTARDIGTGCLLYASMIDDIGIDLPKAPNNFGEITGKLVISGGLNFQVVKEVLKKVEDDLFRKLIFDGVLRTVSSNSSGQGLLDSFASDIEACRSLAS 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45684931 45689639 - evm.model.ptg000008l.588 HCH8g0947 550045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0947 785 FunFam Eukaryotic translation initiation factor isoform 4G-2 613 775 - -
HCH8g0947 785 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 99 783 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
HCH8g0947 785 SUPERFAMILY ARM repeat 208 434 IPR016024 -
HCH8g0947 785 Pfam MA3 domain 620 731 IPR003891 -
HCH8g0947 785 MobiDBLite consensus disorder prediction 469 487 - -
HCH8g0947 785 Gene3D - 214 445 - -
HCH8g0947 785 MobiDBLite consensus disorder prediction 21 47 - -
HCH8g0947 785 SMART ma3_7 620 732 IPR003891 -
HCH8g0947 785 SMART if4_15 214 432 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH8g0947 785 MobiDBLite consensus disorder prediction 106 194 - -
HCH8g0947 785 SUPERFAMILY ARM repeat 615 773 IPR016024 -
HCH8g0947 785 Pfam MIF4G domain 214 432 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH8g0947 785 Gene3D - 613 779 - -
HCH8g0947 785 FunFam Eukaryotic translation initiation factor isoform 4G-2 205 433 - -
HCH8g0947 785 ProSiteProfiles MI domain profile. 619 741 IPR003891 -
HCH8g0947 785 MobiDBLite consensus disorder prediction 469 489 - -
HCH8g0947 785 MobiDBLite consensus disorder prediction 106 144 - -
HCH8g0947 785 MobiDBLite consensus disorder prediction 164 187 - -
HCH8g0947 785 MobiDBLite consensus disorder prediction 1 63 - -
HCH8g0947 785 MobiDBLite consensus disorder prediction 145 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0428 HCH-Chr12:2475472 HCH8g0947 HCH-Chr8:45684931 5.60E-259 dispersed
HCH6g1375 HCH-Chr6:47686395 HCH8g0947 HCH-Chr8:45684931 6.60E-51 dispersed
HCH7g1465 HCH-Chr7:47287600 HCH8g0947 HCH-Chr8:45684931 2.30E-50 dispersed
HCH3g0398 HCH-Chr3:2593391 HCH8g0947 HCH-Chr8:45684931 2.00E-08 transposed
HCH12g0427 HCH-Chr12:2472210 HCH8g0947 HCH-Chr8:45684931 1.40E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0947 K03260 - csv:101207520 1165.6