Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0949 ATGGAAGCAAGTGCCGGACTCGTTGCCGGGTCTCATAACCGCAATGAGCTCGTTGTCATTCATGGCCATGAAGAGCCAAAGCCATTGAAGAACTTGGATGGTCAGGTGTGTGAGATTTGTGGTGATGAAGTGGGGCTTACAGTGGATAGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCAGTCTGCAGGCCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAACTGTGCCCTCAATGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCAAGGGTGGAGGGAGATGATGATGAAGAGGATATAGATGATATTGAACATGAGTTCAAGATTGAAGATGAGAGGAACAAGCACAGTCATCAGGCAGAAGCCATGCTTCATGGCAAGATGAGCTATGGCAGAGGCCCAGATGATGATGAAAATTCCCAGTTTCCCCCTGTTATTGCTGGAGGCAGATCACAGCCAGTGAGTGGTGAGCTTCCAATATCATCTCAAGGTAACGGGGAGCAGATGTTATCGTCTTCACTGCACAAACGTGTACATCCTTATCCAATTTCTGAAGCAGGGAGTGCAAGATGGGACGAAAAGAAAGAGGAAGGTTGGAGAGACCGAATGGATGACTGGAAATTGCAGCAAGGAAATCTCGGGCCTGAACATGATGATGCCAATGACCCTGACATGGCCATGATTGATGAAGCTAGACAACCACTGTCAAGGAAGGTACCAATAGCATCAAGCAAAATCAATCCTTATCGGATGATTATTGTGGCTCGACTCGCTATTCTTGCCTTATTCCTTCGATATCGAATACTAAATCCAGTTCATGATGCAATCGGATTGTGGCTAACTTCTGTAATATGTGAAATCTGGTTTGCATTTTCATGGATTCTCGACCAGTTTCCTAAATGGTTCCCAATTGATCGTGAAACATACTTGGATCGTCTATCCCTTAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCAGTGGACATTTTTGTCAGCACTGTGGATCCTTTGAAGGAACCTCCACTTGTAACAGCTAACACAATCTTATCTATCCTGGCCATGGACTACCCAGTTGATAAGATTTCTTGCTATGTTTCGGACGACGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAGACTGCAGAATTTGCCAGGAAATGGGTACCTTTTTGCAAGAAATTTTCTATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGGTCGACTATCTCAAGGATAAAGTTCAGCCAACATTTGTAAAGGAGCGTCGAGCGATGAAGAGAGAATATGAAGAATTCAAAGTCAGGGTAAATGCTCAAGTGGCAAAGGCCATGAAAGTTCCCATAGAAGGATGGATTATGCAAGATGGAACACCATGGCCAGGAAACAATACAAAAGATCATCCTGGTATGATTCAAGTCTTTCTGGGTCACAGTGGAGGCCTTGATACAGAGGGGAACGAACTCCCTCGCCTCGTTTATGTATCTCGTGAGAAAAGACCGGGTTTCCAACATCATAAAAAAGCTGGTGCCATGAATGCCCTGATTCGTGTCTCTGCAGTGCTTACGAATGCTCCTTTCATGCTGAACTTGGACTGTGACCACTATATAAACAACAGTAAAGCAGCAAGGGAGGCCATGTGTTTCCTGATGGACATGCAAATTGGAAAGAAAGTCTGCTATGTTCAATTTCCACAAAGATTTGATGGCATAGATAGGAATGATCGTTACGCCAACAGAAATACAGTCTTCTTTGATATTAATATGCGAGGTTTAGATGGTATCCAGGGTCCTGTATATGTTGGCACTGGGTGTGTTTTCAGGAGACAAGCTTTATATGGTTATGAACCTCCAAAAGGACCTAAGCGCCCAAAGATGGTAAGCTGCGACTGCTGCCCATGTTTCGGACGCCGCAAGAAGCTCAAATACTCTAAAAGTGGTGCAGCAGGAGATGGTGCAGGTGTCTTTAACTTTTTTTTTTTTTCAAAGATCAAACTTTGTTTGTCTTGGTGGAATTTTTTGCTGTCAGATTGTTTTAACTCAGTGTCAATCTTACTGCTGCTGTGTATAGGAATGGAAGACGACAAGGAACTACTGATGTCCCAGATGAATTTCGAAAAGAAATTTGGACAGTCAGCCATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCTCCTTCCTCAAGTCCAGCAGCCTTGCTTAAGGAAGCAATTCATGTAATCAGCTGTGGTTATGAAGACAAAACTGAATGGGGTACCGAGTTGGGCTGGATATATGGATCTATCACAGAGGATATTTTAACAGGCTTCAAGATGCATTGCCGTGGTTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCTATCAACTTGTCTGATCGGCTAAACCAGGTGCTTCGATGGGCACTCGGCTCTATTGAAATCTTTTTCAGTAATCACTGCCCTGTTTGGTACGGCTACAAGGGTGGGAATCTAAAGTGGCTCGAGAGATTTGCATACGTTAATACAACTGTCTACCCGTTCACTTCAATACCACTTCTCGCATACTGTACCCTCCCTGCCATCTGCCTACTCACTGATAAGTTCATCATGCCACCGATAAGCACTTTTGCAAGTCTCTACTTCATTTCCTTGTTTCTTTCCATAATCGCCACGGGTATTCTTGAGCTCAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTAATTGGTGGTATTTCAGCTCACCTGTTCGCTGTTGTACAAGGTCTATTAAAGGTTTTGGCTGGAGTCAATACTAGCTTCACAGTTACATCCAAGGCAACAGATGATGAAGATTTCGGAGAGTTATACGCCTTCAAATGGACTACTCTGCTAATCCCTCCGACAACTATTTTGATCATCAACATTGTAGGGGTTGTTGCAGGTATCTCAGATGCCATAAACAATGGGTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTCCATCTCTACCCATTCCTTAAAGGTCTGATGGGCCGACAAAACCGCACACCAACAATCGTGGTCATATGGTCAGTGCTGTTGGCTTCCATCTTCTCCTTGCTTTGGGTCCGAATCGACCCATTTGTGATGAAAACAAAGGGACCTGATACTAAGCAATGTGGACTCAACTGCTGA 3228 44.05 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDSDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFKIEDERNKHSHQAEAMLHGKMSYGRGPDDDENSQFPPVIAGGRSQPVSGELPISSQGNGEQMLSSSLHKRVHPYPISEAGSARWDEKKEEGWRDRMDDWKLQQGNLGPEHDDANDPDMAMIDEARQPLSRKVPIASSKINPYRMIIVARLAILALFLRYRILNPVHDAIGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPLKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKVDYLKDKVQPTFVKERRAMKREYEEFKVRVNAQVAKAMKVPIEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDMQIGKKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKYSKSGAAGDGAGVFNFFFFSKIKLCLSWWNFLLSDCFNSVSILLLLCIGMEDDKELLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGNLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLYFISLFLSIIATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGVNTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45694181 45698717 - evm.model.ptg000008l.586 HCH8g0949 550047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0949 1075 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 446 624 IPR029044 -
HCH8g0949 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
HCH8g0949 1075 SUPERFAMILY RING/U-box 21 105 - -
HCH8g0949 1075 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 239 1044 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
HCH8g0949 1075 SUPERFAMILY Nucleotide-diphospho-sugar transferases 347 892 IPR029044 -
HCH8g0949 1075 CDD mRING-HC-C4C4_CesA 35 85 - -
HCH8g0949 1075 Pfam Cellulose synthase 333 1069 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
HCH8g0949 1075 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
HCH8g0949 1075 FunFam Cellulose synthase 450 624 - -
HCH8g0949 1075 FunFam Cellulose synthase 19 110 - -
HCH8g0949 1075 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0166 HCH-Chr14:26557727 HCH8g0949 HCH-Chr8:45694181 0.00E+00 dispersed
HCH7g0248 HCH-Chr7:1713063 HCH8g0949 HCH-Chr8:45694181 6.00E-101 dispersed
HCH8g0949 HCH-Chr8:45694181 HCH9g1098 HCH-Chr9:13073945 0.00E+00 dispersed
HCH8g0949 HCH-Chr8:45694181 HCH2g0720 HCH-Chr2:50892902 3.20E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0949 K10999 - csv:101214842 1999.17