Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0965 ATGGGAAAGTCATCTTCTCAACAGACTCCGGATTCAGACCATGGAAATAAGAATGTCGTTATGACAAAAACGAAGACGAAGCGGACGAGGAGGAGCGTCCCGAGGGATTCTCCTCCTCAACGAAGCTCCATTTATCGCGGGGTTACTAGACATCGATGGACAGGACGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCACAAAACAAGAAAGGAAGGCAAGGTGCATATGATGATGAAGAAGCAGCAGCACATGCTTATGATCTCGCAGCATTGAAATACTGGGGTCCAGAAACAATTCTTAATTTTCCACTAGCAACGTACCAAAAAGAGATGAAAGAAATGGAGGGCCAATCTAGAGAAGAATACATTGGATCATTGAGAAGAAAAAGCAGTGGCTTTTCTCGGGGAGTTTCAAAATATAGAGGCGTCGCAAGACATCATCACAATGGAAGATGGGAAGCTCGGATTGGCAGAGTATTTGGCAACAAGTATCTCTATCTTGGAACATATGCCACACAAGAAGAAGCAGCAACCGCCTACGATATCGCAGCCATAGAATACCGTGGACTAAACGCCGTTACAAATTTCGACCTAAGCCGTTACATCAAGTGGCTAAAACCCAATAACGACGTCACTTACGACGACGACGACAACAACAACCACGTCATCACCGTCGATTCAATTCTTCCAAACCCTAAGCAAGAACTCGAGCTAGGGTTTTTCCCTCCGGATCAGAATCTAACCGGCGATGTTTCGCCGGAGGAACAAATTCCATTTCCCCGGCACCGATCGACTACCTCCACGTCAGCCCTAGGGCTTCTACTTCAATCTTCGAAGTTTAAGGAAATGATGGAAACGAATTCGGCGGCGGAATCTCCGTCATCACCGACGTCGGAGCAGATGGAAAGTCGGCGGTGTTTGTTTCCCGACGATGTACAGACGTTGTTTGATTGCGATAACTCGGGATCTTACTGTTATGGAGAAGCAGAAGATGCTATATTTAGCGATTTCAATTCTTTCATGGCGGCGCCGCCATTATCGCATTATGAGTTTGTTGATTAG 1074 45.72 MGKSSSQQTPDSDHGNKNVVMTKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGPETILNFPLATYQKEMKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPNNDVTYDDDDNNNHVITVDSILPNPKQELELGFFPPDQNLTGDVSPEEQIPFPRHRSTTSTSALGLLLQSSKFKEMMETNSAAESPSSPTSEQMESRRCLFPDDVQTLFDCDNSGSYCYGEAEDAIFSDFNSFMAAPPLSHYEFVD 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45789040 45791160 + evm.model.ptg000008l.570 HCH8g0965 550063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0965 357 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0965 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 230 - -
HCH8g0965 357 CDD AP2 142 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0965 357 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0965 357 PRINTS Ethylene responsive element binding protein signature 183 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0965 357 MobiDBLite consensus disorder prediction 243 271 - -
HCH8g0965 357 SUPERFAMILY DNA-binding domain 142 203 IPR016177 GO:0003677(InterPro)
HCH8g0965 357 Gene3D AP2/ERF domain 142 203 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0965 357 Gene3D AP2/ERF domain 44 109 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0965 357 FunFam AP2-like ethylene-responsive transcription factor 43 109 - -
HCH8g0965 357 ProSiteProfiles AP2/ERF domain profile. 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0965 357 MobiDBLite consensus disorder prediction 1 44 - -
HCH8g0965 357 MobiDBLite consensus disorder prediction 288 308 - -
HCH8g0965 357 MobiDBLite consensus disorder prediction 1 19 - -
HCH8g0965 357 FunFam AP2-like ethylene-responsive transcription factor 142 203 - -
HCH8g0965 357 SUPERFAMILY DNA-binding domain 43 108 IPR016177 GO:0003677(InterPro)
HCH8g0965 357 SMART rav1_2 44 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0965 357 SMART rav1_2 143 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0965 357 MobiDBLite consensus disorder prediction 288 306 - -
HCH8g0965 357 Pfam AP2 domain 142 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1249 HCH-Chr4:8567549 HCH8g0965 HCH-Chr8:45789040 1.60E-112 dispersed
HCH4g1622 HCH-Chr4:15075431 HCH8g0965 HCH-Chr8:45789040 1.80E-77 dispersed
HCH8g0965 HCH-Chr8:45789040 HCH8g1037 HCH-Chr8:46330493 1.90E-68 dispersed
HCH8g0965 HCH-Chr8:45789040 HCH9g0209 HCH-Chr9:1233045 2.40E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34038 PF00847 AP2 1.50E-09 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0965 K09285 - csv:101219103 537.724