Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0965 | ATGGGAAAGTCATCTTCTCAACAGACTCCGGATTCAGACCATGGAAATAAGAATGTCGTTATGACAAAAACGAAGACGAAGCGGACGAGGAGGAGCGTCCCGAGGGATTCTCCTCCTCAACGAAGCTCCATTTATCGCGGGGTTACTAGACATCGATGGACAGGACGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCACAAAACAAGAAAGGAAGGCAAGGTGCATATGATGATGAAGAAGCAGCAGCACATGCTTATGATCTCGCAGCATTGAAATACTGGGGTCCAGAAACAATTCTTAATTTTCCACTAGCAACGTACCAAAAAGAGATGAAAGAAATGGAGGGCCAATCTAGAGAAGAATACATTGGATCATTGAGAAGAAAAAGCAGTGGCTTTTCTCGGGGAGTTTCAAAATATAGAGGCGTCGCAAGACATCATCACAATGGAAGATGGGAAGCTCGGATTGGCAGAGTATTTGGCAACAAGTATCTCTATCTTGGAACATATGCCACACAAGAAGAAGCAGCAACCGCCTACGATATCGCAGCCATAGAATACCGTGGACTAAACGCCGTTACAAATTTCGACCTAAGCCGTTACATCAAGTGGCTAAAACCCAATAACGACGTCACTTACGACGACGACGACAACAACAACCACGTCATCACCGTCGATTCAATTCTTCCAAACCCTAAGCAAGAACTCGAGCTAGGGTTTTTCCCTCCGGATCAGAATCTAACCGGCGATGTTTCGCCGGAGGAACAAATTCCATTTCCCCGGCACCGATCGACTACCTCCACGTCAGCCCTAGGGCTTCTACTTCAATCTTCGAAGTTTAAGGAAATGATGGAAACGAATTCGGCGGCGGAATCTCCGTCATCACCGACGTCGGAGCAGATGGAAAGTCGGCGGTGTTTGTTTCCCGACGATGTACAGACGTTGTTTGATTGCGATAACTCGGGATCTTACTGTTATGGAGAAGCAGAAGATGCTATATTTAGCGATTTCAATTCTTTCATGGCGGCGCCGCCATTATCGCATTATGAGTTTGTTGATTAG | 1074 | 45.72 | MGKSSSQQTPDSDHGNKNVVMTKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGPETILNFPLATYQKEMKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPNNDVTYDDDDNNNHVITVDSILPNPKQELELGFFPPDQNLTGDVSPEEQIPFPRHRSTTSTSALGLLLQSSKFKEMMETNSAAESPSSPTSEQMESRRCLFPDDVQTLFDCDNSGSYCYGEAEDAIFSDFNSFMAAPPLSHYEFVD | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 45789040 | 45791160 | + | evm.model.ptg000008l.570 | HCH8g0965 | 550063 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0965 | 357 | ProSiteProfiles | AP2/ERF domain profile. | 143 | 201 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0965 | 357 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 27 | 230 | - | - | |
HCH8g0965 | 357 | CDD | AP2 | 142 | 203 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0965 | 357 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0965 | 357 | PRINTS | Ethylene responsive element binding protein signature | 183 | 203 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0965 | 357 | MobiDBLite | consensus disorder prediction | 243 | 271 | - | - | |
HCH8g0965 | 357 | SUPERFAMILY | DNA-binding domain | 142 | 203 | IPR016177 | GO:0003677(InterPro) | |
HCH8g0965 | 357 | Gene3D | AP2/ERF domain | 142 | 203 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0965 | 357 | Gene3D | AP2/ERF domain | 44 | 109 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0965 | 357 | FunFam | AP2-like ethylene-responsive transcription factor | 43 | 109 | - | - | |
HCH8g0965 | 357 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0965 | 357 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
HCH8g0965 | 357 | MobiDBLite | consensus disorder prediction | 288 | 308 | - | - | |
HCH8g0965 | 357 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
HCH8g0965 | 357 | FunFam | AP2-like ethylene-responsive transcription factor | 142 | 203 | - | - | |
HCH8g0965 | 357 | SUPERFAMILY | DNA-binding domain | 43 | 108 | IPR016177 | GO:0003677(InterPro) | |
HCH8g0965 | 357 | SMART | rav1_2 | 44 | 113 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0965 | 357 | SMART | rav1_2 | 143 | 207 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0965 | 357 | MobiDBLite | consensus disorder prediction | 288 | 306 | - | - | |
HCH8g0965 | 357 | Pfam | AP2 domain | 142 | 193 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g1249 | HCH-Chr4:8567549 | HCH8g0965 | HCH-Chr8:45789040 | 1.60E-112 | dispersed | |
HCH4g1622 | HCH-Chr4:15075431 | HCH8g0965 | HCH-Chr8:45789040 | 1.80E-77 | dispersed | |
HCH8g0965 | HCH-Chr8:45789040 | HCH8g1037 | HCH-Chr8:46330493 | 1.90E-68 | dispersed | |
HCH8g0965 | HCH-Chr8:45789040 | HCH9g0209 | HCH-Chr9:1233045 | 2.40E-79 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34038 | PF00847 | AP2 | 1.50E-09 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g0965 | K09285 | - | csv:101219103 | 537.724 |