Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0968 | ATGGTTTTCTTCTTCTTCTTCTTAACAATGGTTGTTCCTAAAATCATCCTTTTTGTCATTCTTTCTTCTGCCATCCTTTGTTTTTCCTATGAACCTCGTAACCCAGAAGTGGAAGCTCTAATTAATGTGAAGACATCATTGAATGATCCACATGGAGTTCTTAGCAATTGGGATGAAGATTCTGTTGACCCTTGTAGTTGGGCAATGATCACTTGTTCCCCTGAGAATCTTGTTATAGGACTAGGAGCTCCAAGCCAATCTCTTTCTGGAACTTTGTCTGGGGCAATTGGGAACCTCACAAATCTTCACCAAGTGCTGCTGCAGAACAACAACATCTCTGGTCCAATTCCTAATGAACTTGGAACTCTTCCATTCCTTCAAACATTAGATCTCTCTAACAACCGGTTCTCTGGTCCAATACCGGCGTCCGTCGGTCAGTTGAACGGTCTACGCTACCTGAGGGTGAACAACAATAGCTTGTCTGGGCCTTTTCCTTTGTCTCTGGCAAAAATCCCTCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTATTTCCTGCCAGAACCTTCAATGTGATTGGAAACCCCATGATTTGTGGAAGTAGCTCTAGTGAAGGTTGCTCTGGCTCTGCAAATTCTATTCCTCTTTCTTTCTCTCTAGAATCCCCCCCTGGACTCAAGTCAAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGCGCTTTTCTGATACTTCTAGCTCTGGGAATTCTTTGGCGCCGAAGAAATTTAAAAACCACCATCCTAGACATCAATGAAAATCAAGAAGTTGGACTTGTGGGCTTAGGCAACCTCAAAAACTTCACTTTCAAAGAGCTTCAGTTAGCAACAGATCATTTTAGTTCCAAGCATATACTTGGTGCTGGAGGTTTTGGTAATGTGTACAAGGGGAAGCTAGGAGATGGGACTATGGTGGCAGTGAAACGGCTAAAAGACGTGACAGGTTCCACTGGGGAATCGCAGTTCCGCACCGAGTTGGAGATGATTAGCCTTGCAGTTCATCGAAATTTGCTTCGGTTAATTGGTTATTGTGCTACTTCTCACGAGAGGCTCTTGGTGTACCCTTACATGTCCAACGGCAGTGTCGCCTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACAAGGAAAAGAATAGCAATTGGAGCTGCAAGGGGTCTGTTGTACCTCCACGAGCAATGCGATCCTAAGATAATTCATAGAGATGTGAAGGCTGCAAATGTGCTTCTAGATGACTACTGTGAAGCCATAGTTGGTGATTTTGGACTTGCAAAGCTTCTCGACCATGCTGACTCTCATGTTACCACTATGGTTCGTGGCACCGTTGGACATATTGCTCCGGAGTATCTTTCAACTGGTCAATCTTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTCTGATAGAGCTAATAACTGGAATGAGAGCTCTTGAATTTGGGAAAACACTAAACCAAAAAGGTGCTCTGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTCGTGGACAGAGAGCTAGGCAACAACTATGATCAGATAGAAGTTGGGGAGATGTTGCAAGTAGCTCTACTCTGCACTCAATACTTCCCTGCCCACCGTCCTAAGATGTCGGAAGTGGTCCGAATGCTGGAAGGCGATGGCCTTGTCGAGAAATGGGCTGCGTCCCATACTCCCAGTGACCTGAATGTCAACCTCTTCCCTTCACGGAATAGCAGCAGAAGTACATACAACCCGACAAACACAATGAAGAATAACAGCAACGATCGGGATCATTCAAGCATGTTAAGTTTGACAATGGATGACGATGACGATGAGCGATCATTAGACTCCTATGCTATGGAACTCTCAGGTCCAAGATAG | 1938 | 44.99 | MVFFFFFLTMVVPKIILFVILSSAILCFSYEPRNPEVEALINVKTSLNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGAIGNLTNLHQVLLQNNNISGPIPNELGTLPFLQTLDLSNNRFSGPIPASVGQLNGLRYLRVNNNSLSGPFPLSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVIGNPMICGSSSSEGCSGSANSIPLSFSLESPPGLKSKRIAVALGVSLSCAFLILLALGILWRRRNLKTTILDINENQEVGLVGLGNLKNFTFKELQLATDHFSSKHILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGSTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAIVGDFGLAKLLDHADSHVTTMVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTLNQKGALLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYFPAHRPKMSEVVRMLEGDGLVEKWAASHTPSDLNVNLFPSRNSSRSTYNPTNTMKNNSNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR | 645 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 45826831 | 45830708 | + | evm.model.ptg000008l.567 | HCH8g0968 | 550066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0968 | 645 | Gene3D | Transferase(Phosphotransferase) domain 1 | 377 | 586 | - | - | |
HCH8g0968 | 645 | FunFam | Somatic embryogenesis receptor kinase 1 | 268 | 376 | - | - | |
HCH8g0968 | 645 | SMART | serkin_6 | 300 | 569 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g0968 | 645 | SUPERFAMILY | Protein kinase-like (PK-like) | 282 | 570 | IPR011009 | - | |
HCH8g0968 | 645 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 16 | 645 | - | - | |
HCH8g0968 | 645 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 377 | 588 | - | - | |
HCH8g0968 | 645 | Gene3D | Ribonuclease Inhibitor | 33 | 215 | IPR032675 | - | |
HCH8g0968 | 645 | MobiDBLite | consensus disorder prediction | 589 | 645 | - | - | |
HCH8g0968 | 645 | Gene3D | Phosphorylase Kinase; domain 1 | 269 | 376 | - | - | |
HCH8g0968 | 645 | Pfam | Protein tyrosine and serine/threonine kinase | 303 | 569 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g0968 | 645 | CDD | TM_EGFR-like | 234 | 265 | - | - | |
HCH8g0968 | 645 | ProSitePatterns | Protein kinases ATP-binding region signature. | 306 | 328 | IPR017441 | GO:0005524(InterPro) | |
HCH8g0968 | 645 | ProSiteProfiles | Protein kinase domain profile. | 300 | 575 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g0968 | 645 | Pfam | Leucine Rich Repeat | 150 | 170 | IPR001611 | GO:0005515(InterPro) | |
HCH8g0968 | 645 | Pfam | Leucine Rich Repeat | 101 | 123 | IPR001611 | GO:0005515(InterPro) | |
HCH8g0968 | 645 | Pfam | Leucine Rich Repeat | 126 | 147 | IPR001611 | GO:0005515(InterPro) | |
HCH8g0968 | 645 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 419 | 431 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g0968 | 645 | MobiDBLite | consensus disorder prediction | 589 | 619 | - | - | |
HCH8g0968 | 645 | Pfam | Leucine rich repeat N-terminal domain | 34 | 73 | IPR013210 | - | |
HCH8g0968 | 645 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 33 | 215 | - | - | |
HCH8g0968 | 645 | SUPERFAMILY | L domain-like | 34 | 285 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0034 | HCH-Chr4:212341 | HCH8g0968 | HCH-Chr8:45826831 | 1.20E-166 | dispersed | |
HCH8g0968 | HCH-Chr8:45826831 | HCH12g0989 | HCH-Chr12:7186492 | 1.50E-68 | dispersed | |
HCH8g0968 | HCH-Chr8:45826831 | HCH13g0647 | HCH-Chr13:5064122 | 5.80E-185 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81717 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-42 | CL0016 | HCH | PK |
Pathway information
