Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0968 ATGGTTTTCTTCTTCTTCTTCTTAACAATGGTTGTTCCTAAAATCATCCTTTTTGTCATTCTTTCTTCTGCCATCCTTTGTTTTTCCTATGAACCTCGTAACCCAGAAGTGGAAGCTCTAATTAATGTGAAGACATCATTGAATGATCCACATGGAGTTCTTAGCAATTGGGATGAAGATTCTGTTGACCCTTGTAGTTGGGCAATGATCACTTGTTCCCCTGAGAATCTTGTTATAGGACTAGGAGCTCCAAGCCAATCTCTTTCTGGAACTTTGTCTGGGGCAATTGGGAACCTCACAAATCTTCACCAAGTGCTGCTGCAGAACAACAACATCTCTGGTCCAATTCCTAATGAACTTGGAACTCTTCCATTCCTTCAAACATTAGATCTCTCTAACAACCGGTTCTCTGGTCCAATACCGGCGTCCGTCGGTCAGTTGAACGGTCTACGCTACCTGAGGGTGAACAACAATAGCTTGTCTGGGCCTTTTCCTTTGTCTCTGGCAAAAATCCCTCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTATTTCCTGCCAGAACCTTCAATGTGATTGGAAACCCCATGATTTGTGGAAGTAGCTCTAGTGAAGGTTGCTCTGGCTCTGCAAATTCTATTCCTCTTTCTTTCTCTCTAGAATCCCCCCCTGGACTCAAGTCAAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGCGCTTTTCTGATACTTCTAGCTCTGGGAATTCTTTGGCGCCGAAGAAATTTAAAAACCACCATCCTAGACATCAATGAAAATCAAGAAGTTGGACTTGTGGGCTTAGGCAACCTCAAAAACTTCACTTTCAAAGAGCTTCAGTTAGCAACAGATCATTTTAGTTCCAAGCATATACTTGGTGCTGGAGGTTTTGGTAATGTGTACAAGGGGAAGCTAGGAGATGGGACTATGGTGGCAGTGAAACGGCTAAAAGACGTGACAGGTTCCACTGGGGAATCGCAGTTCCGCACCGAGTTGGAGATGATTAGCCTTGCAGTTCATCGAAATTTGCTTCGGTTAATTGGTTATTGTGCTACTTCTCACGAGAGGCTCTTGGTGTACCCTTACATGTCCAACGGCAGTGTCGCCTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACAAGGAAAAGAATAGCAATTGGAGCTGCAAGGGGTCTGTTGTACCTCCACGAGCAATGCGATCCTAAGATAATTCATAGAGATGTGAAGGCTGCAAATGTGCTTCTAGATGACTACTGTGAAGCCATAGTTGGTGATTTTGGACTTGCAAAGCTTCTCGACCATGCTGACTCTCATGTTACCACTATGGTTCGTGGCACCGTTGGACATATTGCTCCGGAGTATCTTTCAACTGGTCAATCTTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTCTGATAGAGCTAATAACTGGAATGAGAGCTCTTGAATTTGGGAAAACACTAAACCAAAAAGGTGCTCTGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTCGTGGACAGAGAGCTAGGCAACAACTATGATCAGATAGAAGTTGGGGAGATGTTGCAAGTAGCTCTACTCTGCACTCAATACTTCCCTGCCCACCGTCCTAAGATGTCGGAAGTGGTCCGAATGCTGGAAGGCGATGGCCTTGTCGAGAAATGGGCTGCGTCCCATACTCCCAGTGACCTGAATGTCAACCTCTTCCCTTCACGGAATAGCAGCAGAAGTACATACAACCCGACAAACACAATGAAGAATAACAGCAACGATCGGGATCATTCAAGCATGTTAAGTTTGACAATGGATGACGATGACGATGAGCGATCATTAGACTCCTATGCTATGGAACTCTCAGGTCCAAGATAG 1938 44.99 MVFFFFFLTMVVPKIILFVILSSAILCFSYEPRNPEVEALINVKTSLNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGTLSGAIGNLTNLHQVLLQNNNISGPIPNELGTLPFLQTLDLSNNRFSGPIPASVGQLNGLRYLRVNNNSLSGPFPLSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVIGNPMICGSSSSEGCSGSANSIPLSFSLESPPGLKSKRIAVALGVSLSCAFLILLALGILWRRRNLKTTILDINENQEVGLVGLGNLKNFTFKELQLATDHFSSKHILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGSTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAIVGDFGLAKLLDHADSHVTTMVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTLNQKGALLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYFPAHRPKMSEVVRMLEGDGLVEKWAASHTPSDLNVNLFPSRNSSRSTYNPTNTMKNNSNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45826831 45830708 + evm.model.ptg000008l.567 HCH8g0968 550066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0968 645 Gene3D Transferase(Phosphotransferase) domain 1 377 586 - -
HCH8g0968 645 FunFam Somatic embryogenesis receptor kinase 1 268 376 - -
HCH8g0968 645 SMART serkin_6 300 569 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0968 645 SUPERFAMILY Protein kinase-like (PK-like) 282 570 IPR011009 -
HCH8g0968 645 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 645 - -
HCH8g0968 645 FunFam Somatic embryogenesis receptor-like kinase 1 377 588 - -
HCH8g0968 645 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
HCH8g0968 645 MobiDBLite consensus disorder prediction 589 645 - -
HCH8g0968 645 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
HCH8g0968 645 Pfam Protein tyrosine and serine/threonine kinase 303 569 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0968 645 CDD TM_EGFR-like 234 265 - -
HCH8g0968 645 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524(InterPro)
HCH8g0968 645 ProSiteProfiles Protein kinase domain profile. 300 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g0968 645 Pfam Leucine Rich Repeat 150 170 IPR001611 GO:0005515(InterPro)
HCH8g0968 645 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
HCH8g0968 645 Pfam Leucine Rich Repeat 126 147 IPR001611 GO:0005515(InterPro)
HCH8g0968 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g0968 645 MobiDBLite consensus disorder prediction 589 619 - -
HCH8g0968 645 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
HCH8g0968 645 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
HCH8g0968 645 SUPERFAMILY L domain-like 34 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0034 HCH-Chr4:212341 HCH8g0968 HCH-Chr8:45826831 1.20E-166 dispersed
HCH8g0968 HCH-Chr8:45826831 HCH12g0989 HCH-Chr12:7186492 1.50E-68 dispersed
HCH8g0968 HCH-Chr8:45826831 HCH13g0647 HCH-Chr13:5064122 5.80E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81717 PF07714 PK_Tyr_Ser-Thr 1.50E-42 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0968 - - - 0.0