Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0978 ATGGGAAATTGTTTTGATGATTACAAGCCAGCGTTGGCTATGTTGGGTTTGCAATGTGTTTACGCAGGTCTTGCAATCTTCAGTAGAGCTGCCTTAGTAGGTGGTATTAGCACCAGAGTCTTTGTTTTCTATAGAAATGCCATTGCCACTCTTGCCATCGCTCCTGCTGCTTACTTCTCTTCTAGGAAAACTAGCGATAGGACTTCAATAGGACTCAGAGGCTTTTCTCTCATCTTTGTAACTTCACTAATTGGAGTATTATGCAATCAAAATGCCTACTTTGAAGGCCTCTACTTATCATCCTCAACCGCTGCTAGTGCAATCGTTAATCTCATACCTGCTATCACCTTTGTGATGGCAGTCATTGCTGGATTTGAGAAAATAAAAGCGAAAAGCTGGAGAACCTTTGCAAAAATATTAGGAACAGTGGTATGTGTTGGTGGAGCAGCTGCCATGGCATTAGTAAAGGGACCAAAGTTATTAAACACAGAAATATTGACACCAACAAATGCTTCTTTCCTTTTGAATATGAGTGGAGTTGGAAATGAAGGTGATAGTTGGCTTTTTGGCTGTGTGCTTCTCTTTCTAAGCAGTTGTTGCTGGTCTTTTTGGATAATCATGCTGGTTCCAATCTCAAGCTACTGTCCCAACCACATAATTTCCTCCATCTGGTTGTTATTCTTTGCCATGTTGCAATCAGCAGCCACTACATTGCTCGTAGAGGACAACACAAAAGTTTGGAACCTCCCCTCTCCATTACAGTTAGCTGCTTGTTTATATGCAGGAACATCTTCAGCATTGTCTTTTTTCGTTCAATCATGGTGTGTATCACGAAGAGGACCTCTTTTCACTGCATTATTCAACCCTCTCTGCACAGTTATCACAGCCATAATTTCTTCTATATTTATGCAGGAAGAGCTATATTTTGGAAGCTTAATAGGAGCTATTACAGTGATAATTGGGTTATATATTGTATTATGGGGCAAAGCTAAGGACAATATTAAACCAGGAGCAGATCATGGTGATTTTGATAACAACGTGGAAGATATGATTGGTGATTATTTAGTGAAGGAGAATTCTAGGACGGATCTAGAAGAGGCACTTATACTCCATGGTGAGGACACAAAGAAATGA 1134 40.12 MGNCFDDYKPALAMLGLQCVYAGLAIFSRAALVGGISTRVFVFYRNAIATLAIAPAAYFSSRKTSDRTSIGLRGFSLIFVTSLIGVLCNQNAYFEGLYLSSSTAASAIVNLIPAITFVMAVIAGFEKIKAKSWRTFAKILGTVVCVGGAAAMALVKGPKLLNTEILTPTNASFLLNMSGVGNEGDSWLFGCVLLFLSSCCWSFWIIMLVPISSYCPNHIISSIWLLFFAMLQSAATTLLVEDNTKVWNLPSPLQLAACLYAGTSSALSFFVQSWCVSRRGPLFTALFNPLCTVITAIISSIFMQEELYFGSLIGAITVIIGLYIVLWGKAKDNIKPGADHGDFDNNVEDMIGDYLVKENSRTDLEEALILHGEDTKK 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45909490 45911578 - evm.model.ptg000008l.557 HCH8g0978 550076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0978 377 PANTHER WAT1-RELATED PROTEIN 12 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH8g0978 377 Pfam EamA-like transporter family 189 326 IPR000620 GO:0016020(InterPro)
HCH8g0978 377 Pfam EamA-like transporter family 12 144 IPR000620 GO:0016020(InterPro)
HCH8g0978 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0291 HCH-Chr10:2410216 HCH8g0978 HCH-Chr8:45909490 2.30E-29 dispersed
HCH8g0978 HCH-Chr8:45909490 HCH9g0974 HCH-Chr9:7272502 2.30E-56 dispersed
HCH8g0978 HCH-Chr8:45909490 HCH8g0979 HCH-Chr8:45915588 1.80E-154 tandem
HCH3g1100 HCH-Chr3:24033230 HCH8g0978 HCH-Chr8:45909490 4.60E-58 transposed
HCH10g0289 HCH-Chr10:2403992 HCH8g0978 HCH-Chr8:45909490 1.50E-92 wgd
HCH8g0978 HCH-Chr8:45909490 HCH9g0161 HCH-Chr9:965277 3.70E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0978 - - - 0.0