Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0989 ATGGGCATGGACTTGAGGAAGGAAAAGCTTGTAAGGTTTTATTCTGATCACAAAAAACATAAGGAGTCTGCTGTGGGAAAATCTGAATCATTGCGACTTGAGAAGTCATCATCTAAATACTATATTTCATCGTCGGGGTTTTTAATACCTGACAATGGACCGGTGGGAAGCAAAAATAAATTTTCTGAAACTTTTAGAACCAAGAAGTCTAAGGTGTTTCCAGAGGACCATGAACCATGGAGCAGAAGAATACTTGATCCTGGTAGCAAAATTGTTTTGAAATGGAATCGAGTGTTCATTTGCTCATGCTTATTAGCACTCTTTGTTGATCCCTTGTATCTTTTCTTGCCGGCTGTGGGAGGGAATGATGGTTCATCATGTGCAAGGACGGATTGGAAATTGCGAATTATTGTGACCTGTTTCCGGACTATTGCAGATATTTTCTATCTGTTGCACATGATCATAAAGTTCAGGACAGCTTATGTTGCTCCTAGCTCTCGAGTGTTTGGGAGAGGTGAACTTGTGATGGATTCAAAGATGATAGCAAAGAAGTATATTAGATCTGACTTTTTCATTGATCTCATTGCCACGCTGCCTCTCCCTCAGATTGTGATCTGGTTCATCATACCAGCAACAAGAAGCCGTTTAACTGATCACAAAAACAATGCTCTTGCACTTATTGTTCTGCTTCAATATATTCCAAGGTTGTATCTGATTTTTCCACTAAGTTCAGAAATCATCAAAGCAAATGGAGTTGTTACAAAAACAGCTTGGGCAGGGGCTGCTTACAATCTACTGCTCTTTATGTTGGCAAGCCATGTTATGGGTGCTTCATGGTATTTGCTATCGGTTGATCGATATACCTCATGCTGGAAATCATATTGTAGAAAGAAGGAATACAATCCAATAGAATGCAACCTAACCTTTTTAGATTGTGATACATTTAACCATGCTAACCGCATTATGTGGGCAAATACAACGCTTGTTTTTCAAAATTGTAATCCTGATGGTGGTACTTTCAATTATGGACTTTTTAAGAATGCCATGGAAAAGAAAGTTGTCTCTTCAAGCTTTGTCGAGAAGTACTTCTACTGTTTGTGGTGGGGCTTGCAAAACTTGAGTTCATATGGGCAGAATTTGGAAACGACCATGTTTATCGGAGAGACACTGTTTGCTGTGCTAATTGCCATCTTAGGTCTCGTATTATTTGCCCATCTGATTGGAAATATGCAGACTTATCTGCAATCCCTCACTGTGAGGCTTGAAGAATGGAGACTAAAGCGAAGAGACACAGAAGAGTGGATGAGACATCGCCAACTCCCTGAAGACTTGAAACAACGTGTTCGACGTTTTGTGCTGTATAAGTGGGTAGCAACTCGAGGAGCGGATGAAGAAGCCATCTTGCAGAGCTTGCCTGCTGATCTTCGGCGTGATATTCAATGCCACCTGTGTTTGGATCTTGTCCGACGAGTCCCTTTCTTCTCACAAATGGATGATCAGCTGCTTGATGCAATATGTGAGCGCCTGGTGTCCTCCTTGAGCACTGAAGGTACCTATATTGTACGTGAGGGCGACCCTGTTACTGAAATGCTGTTTATTATCCGAGGAAGATTGGAGAGTTCTACTACAAATGGAGGTCGTTCGGGTTTCTTCAACTCCATAACATTGCGTCCTGGAGACTTTTGTGGGGAAGAACTACTTTCGTGGGCCTTGCTTCCAAAATCCACTGTCAACTTACCTTCTTCAACTAGAACAGTCGTAGCACTCAATGAAGTTGAAGCTTTTGCACTGCGTGCTGAAGATCTGAAATTTGTGGCCAACCAATTTAGACGTCTTCACAGTAAAAAATTGCAGCACACGTTCCGCTTTTACTCCCATCATTGGAGAACATGGGCAGCTTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAGAGGATGTTGGCAAAGGATCTCTTAATGAAGGAATCTTTGATAATCTATAAGGAAGTGGCTGATGAAACTAACCAAGTAGGAGGAGGGGAGCAAGTCCCTCTTGTTTCAAATCCTTCTCAGACAAGAGCGAATCTGGATATCACCTTATTAGCTTCAAGATTTGCAGCCAACACAAGGAGAGGTGCACAGAGGATGAAATATGACTTGCCAAAGTTACAGAAGCCTGAAGAACCCGACTTTTCTGCTGAGCCGGATAGGTAA 2196 42.08 MGMDLRKEKLVRFYSDHKKHKESAVGKSESLRLEKSSSKYYISSSGFLIPDNGPVGSKNKFSETFRTKKSKVFPEDHEPWSRRILDPGSKIVLKWNRVFICSCLLALFVDPLYLFLPAVGGNDGSSCARTDWKLRIIVTCFRTIADIFYLLHMIIKFRTAYVAPSSRVFGRGELVMDSKMIAKKYIRSDFFIDLIATLPLPQIVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLFMLASHVMGASWYLLSVDRYTSCWKSYCRKKEYNPIECNLTFLDCDTFNHANRIMWANTTLVFQNCNPDGGTFNYGLFKNAMEKKVVSSSFVEKYFYCLWWGLQNLSSYGQNLETTMFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKQRVRRFVLYKWVATRGADEEAILQSLPADLRRDIQCHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALLPKSTVNLPSSTRTVVALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMLAKDLLMKESLIIYKEVADETNQVGGGEQVPLVSNPSQTRANLDITLLASRFAANTRRGAQRMKYDLPKLQKPEEPDFSAEPDR 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45991506 45997574 + evm.model.ptg000008l.546 HCH8g0989 550087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0989 731 Pfam Ion transport protein 102 420 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH8g0989 731 Pfam Cyclic nucleotide-binding domain 516 605 IPR000595 -
HCH8g0989 731 CDD CAP_ED 493 624 IPR000595 -
HCH8g0989 731 Gene3D Jelly Rolls 491 611 IPR014710 -
HCH8g0989 731 FunFam Cyclic nucleotide-gated ion channel 1 491 609 - -
HCH8g0989 731 FunFam Cyclic nucleotide-gated ion channel 1 420 484 - -
HCH8g0989 731 SUPERFAMILY cAMP-binding domain-like 423 615 IPR018490 -
HCH8g0989 731 SMART cnmp_10 493 624 IPR000595 -
HCH8g0989 731 Gene3D - 125 418 - -
HCH8g0989 731 ProSiteProfiles cAMP/cGMP binding motif profile. 493 576 IPR000595 -
HCH8g0989 731 SUPERFAMILY Voltage-gated potassium channels 87 415 - -
HCH8g0989 731 Gene3D Helix hairpin bin 421 484 - -
HCH8g0989 731 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 63 711 - -
HCH8g0989 731 MobiDBLite consensus disorder prediction 710 731 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1187 HCH-Chr2:54377065 HCH8g0989 HCH-Chr8:45991506 9.40E-213 dispersed
HCH6g0713 HCH-Chr6:40557755 HCH8g0989 HCH-Chr8:45991506 5.10E-102 dispersed
HCH8g0989 HCH-Chr8:45991506 HCH9g0157 HCH-Chr9:926005 7.40E-245 dispersed
HCH11g1036 HCH-Chr11:41907522 HCH8g0989 HCH-Chr8:45991506 1.80E-99 transposed
HCH12g0292 HCH-Chr12:1652645 HCH8g0989 HCH-Chr8:45991506 6.00E-279 transposed
HCH13g0697 HCH-Chr13:5689475 HCH8g0989 HCH-Chr8:45991506 1.70E-105 transposed
HCH8g0989 HCH-Chr8:45991506 HCH9g0186 HCH-Chr9:1095262 2.70E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0989 K27629 - csv:101218643 1297.72