Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0990 ATGTTGACAACAGTCATAGAAGCTTCTTCTTCACCACTTTGCTTCAACTTCTTCACCCATTCTCTTACCAATTCCAATTCCAAGCCAAGGCCCAGAATTTCAGTTTGCCGAGCTTCCTTATCCCTTCATAACAAGACCAGCACCACTAATTCCTGGAACCTTGGACTCTTTTCCAACAGTTCTGAGAGTTCAGTTTTTGATCCCTTGGGCATCCTGCCAGATTCTTCTACTGGATTAAATAATACATGGGAAAGTTTTCTTGGCTTATTTGGACAAACATTTGATAGTGCTTCAAGCACAAAAAAGGATAAGTCTTCGTCAGCACGGGGATTTGCAGCTGCAATTGAGGATAGTTCCATTGACATAGGGGACTTTTTCAAAGGTCCATTGCCTGGAAAATTTCTTCAGCTTTTGGGCTATTTAGCACTATCTAGGCTTGGAATCTATATACCTCTTGGTGGAGTGAACCGAGAGGCTTTCGCTGGCAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCTGGTGGAGGCATTGGTAGACTAGGGATATGCTCACTTGGCATTGTTCCCTTCATCAATGCACAAATTGTCTTCCAACTTCTTGCACAAGTTTATCCGAAGTTGCAAGAGCTTCAGAAAAGAGAAGGCGAAGCAGGGAGAAAGAAGATTCTCCAATATACTCGATATGCCTCAGTTGGGTTTGCAATTGTACAGGCAATTGGTCAAGTTCTCTATCTGCGGCCCTATGTTAATGATTTCAGTACAGAGTGGGTGCTCTCTTCTGTTATATTATTAACACTCGGCTCGGTCATAACAACATACATTGGAGAACGGATCTCGGACCTTAAGCTTGGAAATGGCACATCTCTTTTAATATTCACTAGCATTATCTCTTACTTACCAGCATCCTTTGGAAGGACAGCTACACAGGCTTTCCAGGATGGTAACTATGTTGGATTGATTGGAATACTAGTCTCCTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCAGAAAGGAAAATCCCACTCAATTATGCTTCAAGATACACCAGCAAAGGTGGAGGGCTTCAGAAATCTGCTTACCTTCCCTTTAAGGTAAATAGTTCTGGTGTGATGCCAATCATTTTTTCTACATCGACATTAGCCCTTCCTGGTACTCTAGCGCGCTTTACAGGTTTATCCGTGCTAAAGAAGGCTGCAGTCGCTTTAAATCCAGGAGGTTCATTCTATCTGCCCACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAGTTGGACCCTGATGATGTGAGTGAGCAATTGAAGCGGCAGGGTGCATCGATTCCTCTTGTCCGTCCAGGCAAAAGTACTGCTTCATTTCTGAAAACGGTCCTAAGTCGGATATCGGTTCTTGGCTCAGCCTTCCTTGCATTTCTTGCTGCCGGCCCTGCAATCATTGAACAAACCACACATCTAACAGCATTTCGAGGATTTGCCGGAACATCTGTTCTTATTCTTGTTGGTTGTGCCACAGATACTGCCAGAAAAGTCCAAGCAGAGCTAATATCCCAGAAGTACAAGAACATAGAGTTTTATGATATTGACAAGTATAATCCATGA 1632 42.52 MLTTVIEASSSPLCFNFFTHSLTNSNSKPRPRISVCRASLSLHNKTSTTNSWNLGLFSNSSESSVFDPLGILPDSSTGLNNTWESFLGLFGQTFDSASSTKKDKSSSARGFAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFAGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVILLTLGSVITTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTATQAFQDGNYVGLIGILVSFFLLVLGIVYVQEAERKIPLNYASRYTSKGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKTVLSRISVLGSAFLAFLAAGPAIIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAELISQKYKNIEFYDIDKYNP 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45998289 46001445 - evm.model.ptg000008l.545 HCH8g0990 550088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0990 543 ProSitePatterns Protein secY signature 2. 277 294 IPR030659 -
HCH8g0990 543 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 125 533 IPR002208 GO:0005048(PANTHER)|GO:0006616(PANTHER)|GO:0008320(PANTHER)|GO:0009535(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)
HCH8g0990 543 SUPERFAMILY Preprotein translocase SecY subunit 126 525 IPR023201 -
HCH8g0990 543 NCBIfam preprotein translocase subunit SecY 133 530 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
HCH8g0990 543 Hamap Protein translocase subunit SecY [secY]. 122 534 IPR026593 -
HCH8g0990 543 Pfam SecY 186 517 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
HCH8g0990 543 PRINTS Preprotein translocase SecY subunit signature 226 249 - -
HCH8g0990 543 PRINTS Preprotein translocase SecY subunit signature 414 436 - -
HCH8g0990 543 PRINTS Preprotein translocase SecY subunit signature 469 487 - -
HCH8g0990 543 PRINTS Preprotein translocase SecY subunit signature 258 283 - -
HCH8g0990 543 PRINTS Preprotein translocase SecY subunit signature 375 394 - -
HCH8g0990 543 PRINTS Preprotein translocase SecY subunit signature 284 307 - -
HCH8g0990 543 PRINTS Preprotein translocase SecY subunit signature 134 152 - -
HCH8g0990 543 PRINTS Preprotein translocase SecY subunit signature 184 204 - -
HCH8g0990 543 PRINTS Preprotein translocase SecY subunit signature 503 521 - -
HCH8g0990 543 FunFam Preprotein translocase subunit SECY, chloroplastic 125 530 - -
HCH8g0990 543 ProSitePatterns Protein secY signature 1. 185 204 IPR030659 -
HCH8g0990 543 Gene3D SecY subunit domain 125 530 IPR023201 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0990 K10956 - csv:101222431 932.169