Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1000 ATGGGATCATCTTTCAGTTGCTGTGGTGCAGAAGAAGTAGACCAAGGGATGAATAGAGTTAGTAATAGTTCATGGAGGATGTTTAGCTACAAGGAATTGCATGCGGCTACAAATGGTTTTCATGAGGATAATAAGCTTGGAGAAGGTGGATTTGGAAGTGTTTATTGGGGAAAGACAAGTGATGGACTTCAGATAGCAGTGAAGAAGCTGAAAGCAATGAATTCGAAAGCAGAAATGGAATTTGCTGTAGAAGTTGAAGTGCTTGCGAGGCTAAGGCACAAGAATCTGTTGGGTTTGAGGGGTTACTGCGTGGGGACTGATCAAAGGCTTATAGTTTACGATTACATGCCAAATCTCAGTTTGCTCTCTCATCTCCATGGCCAATTTGGAAGTGAAGCTCAATTAGATTGGAAAAGAAGAATCAAAATCGCTCTTGGCTCTGCACAAGGAATCTTGTACTTGCACCAAGAGGTGACACCCCACATAATTCATCGCGATATCAAAGCTAGCAATATCCTCCTCGATTCCGATTTCGAGCCACTCGTTGCTGATTTCGGGTTTGCGAAATTGATACCGGAGGGAGTTAGTCACATGACAACTCGAGTCAAAGGAACGTTAGGATATCTGGCACCCGAATACGCCATGTGGGGGAAAGTTTCAGAGAGTTGTGATGTTTATAGTTATGGGATTCTTCTACTAGAGCTGATGACAGGAAGAAAGCCAATAGAAAAACTCCCTGGTGGAGCAAAGAGAACCATTACTGAGTGGGTTGAGACGATGATTTCCAAAGGAAGGTTCAAGGATTTGGTGGATAAAAAGTTAAAGGGACATCTCAACTGGAAACAATTTGAACAAACAATCCATTTGGCAATTATGTGTGTGCGAAGTGAGCCTGATAAGAGGCCTACCATAAAAGAAGTGGTGAATCTTTTGAAGGGTTTAATGGCTGATGATCAAAATGAACAAAAAGGAAACAAAGCAATTCAAAGTGTAAAACATGATGAAGAAATGGTTGAATATGATCATATGAGTAATGGAGATCATGAGAAAGACGAAGAAAAAAGCTATGATTATGGAGTTTTTAGTGCCATTGAAGAGCAAAAGATGAGACATCCTTATAAACACTAG 1128 40.78 MGSSFSCCGAEEVDQGMNRVSNSSWRMFSYKELHAATNGFHEDNKLGEGGFGSVYWGKTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGQFGSEAQLDWKRRIKIALGSAQGILYLHQEVTPHIIHRDIKASNILLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSYGILLLELMTGRKPIEKLPGGAKRTITEWVETMISKGRFKDLVDKKLKGHLNWKQFEQTIHLAIMCVRSEPDKRPTIKEVVNLLKGLMADDQNEQKGNKAIQSVKHDEEMVEYDHMSNGDHEKDEEKSYDYGVFSAIEEQKMRHPYKH 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46079452 46081393 + evm.model.ptg000008l.535 HCH8g1000 550098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1000 375 CDD STKc_IRAK 46 314 - -
HCH8g1000 375 ProSiteProfiles Protein kinase domain profile. 40 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1000 375 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
HCH8g1000 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1000 375 SMART serkin_6 40 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1000 375 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
HCH8g1000 375 PANTHER OS01G0750732 PROTEIN 22 349 IPR050885 -
HCH8g1000 375 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
HCH8g1000 375 Pfam Protein kinase domain 40 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1000 375 SUPERFAMILY Protein kinase-like (PK-like) 18 311 IPR011009 -
HCH8g1000 375 PIRSF TyrPK_CSF1-R 283 373 - -
HCH8g1000 375 PIRSF TyrPK_CSF1-R 128 247 - -
HCH8g1000 375 PIRSF TyrPK_CSF1-R 43 131 - -
HCH8g1000 375 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524(InterPro)
HCH8g1000 375 Gene3D Transferase(Phosphotransferase) domain 1 116 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0245 HCH-Chr6:3531102 HCH8g1000 HCH-Chr8:46079452 1.60E-115 dispersed
HCH8g0750 HCH-Chr8:44129632 HCH8g1000 HCH-Chr8:46079452 4.10E-74 dispersed
HCH8g1000 HCH-Chr8:46079452 HCH6g0442 HCH-Chr6:12270439 1.80E-69 dispersed
HCH8g1000 HCH-Chr8:46079452 HCH8g1001 HCH-Chr8:46084649 1.20E-68 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81718 PF00069 Pkinase 2.10E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1000 - - - 0.0