Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1002 ATGGGAATTGAGAGAGAAAATGTGGTAAAGAGTTTCGGCGGCGGATGGGGTGTGATGGCTAAACCATGCGACTCCTGTAAGACGGGCGGGGCGACGGTCTACTGTCGTCCCGACTCCGCGTTTCTTTGCTTGGACTGTGACGCTAAAATTCACTGCGCCAATAAGCTCGCTTCTCGCCACGAACGTGTCTGGATGTGCGAGGTCTGCGAACAAGCACCCGCCGTGGTCACGTGCAAGGCCGACGCCGCCGCTCTATGTGTCACGTGCGATGCGGATATTCATTCCGCTAATCCGCTAGCGCGCCGTCACGAGCGTGTCCCTGTTGAGCCCTTCTTCGACTCGGCTGAGTCAATGGTTAAATCCTCTTCGGTTTTTAACTTCCTTGTTCATGGTGAAATTACTAATCACCACCACCACCACCACGAGGAGGTGGAGCCGGAGGTTGCGTCTTGGCTTTTGCCTAATCCGACTCATTTCAATTCTAAGCTTGTGGATGAAACCGAAATGAAGCCGGCTGATTTGTTCTTTCATGAAATGGATTCCTTTCTTGATTTTGATTATCCCAACCCGGTCCACAACAGTACCGTTAACGATAGCGTTGTACCAGTTCAGACCAAACCGATCTCTGTGCCAATGATCAATCATAATCACTCCACGGAAAATTGTTACGATATCGATTTCTGTAGATCGAAGCTGAATTCATTCGGTTATCAACCTCAATCCCTTAGCCATAGTGTATCATCTTCTTCTCTAGAAGTTGGAGTAGTTCCGGAAGGGAATTCGATATCGGAATTATCGTATTCCTTCGGCCAAACGGGGAGCAACGGTTCCGATTCGAGCTTACCGATCTCTACGACAGCGAGCCAGGCGACTCAATTATGCGGAATGGATCGAGAGGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAATCGTAAGTTTGAAAAAACAATCCGTTACGCTTCGAGAAAAGCTTATGCAGAAACTCGGCCAAGAATCAAAGGCCGGTTCGCGAAACGGACGGAAAGCCTTAATGATATGGACGAAATTTATGGCTCAGATACTTCGCCGGCGTTCTTGGCCGACGCTTACGGCGTTGTTCCAACGTTTTGA 1113 49.15 MGIERENVVKSFGGGWGVMAKPCDSCKTGGATVYCRPDSAFLCLDCDAKIHCANKLASRHERVWMCEVCEQAPAVVTCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSAESMVKSSSVFNFLVHGEITNHHHHHHEEVEPEVASWLLPNPTHFNSKLVDETEMKPADLFFHEMDSFLDFDYPNPVHNSTVNDSVVPVQTKPISVPMINHNHSTENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSISELSYSFGQTGSNGSDSSLPISTTASQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTESLNDMDEIYGSDTSPAFLADAYGVVPTF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46108337 46109594 - evm.model.ptg000008l.533 HCH8g1002 550100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1002 370 Pfam CCT motif 298 340 IPR010402 GO:0005515(InterPro)
HCH8g1002 370 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
HCH8g1002 370 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515(InterPro)
HCH8g1002 370 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
HCH8g1002 370 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
HCH8g1002 370 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
HCH8g1002 370 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
HCH8g1002 370 CDD Bbox1_BBX-like 22 65 IPR049808 -
HCH8g1002 370 CDD Bbox1_BBX-like 66 108 IPR049808 -
HCH8g1002 370 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 355 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1002 HCH-Chr8:46108337 HCH8g1173 HCH-Chr8:47295179 1.80E-08 dispersed
HCH4g0488 HCH-Chr4:3176046 HCH8g1002 HCH-Chr8:46108337 6.50E-66 transposed
HCH6g0619 HCH-Chr6:37204411 HCH8g1002 HCH-Chr8:46108337 1.50E-07 transposed
HCH9g0345 HCH-Chr9:2144707 HCH8g1002 HCH-Chr8:46108337 6.30E-35 transposed
HCH10g0276 HCH-Chr10:2280677 HCH8g1002 HCH-Chr8:46108337 7.80E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34041 PF00643 zf-B_box 1.20E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1002 - - - 0.0