Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1015 ATGCAAACAAGGTATATGGAGAGGACTAACTCTATGAGGGATAAGAGGAGTTTGGAAGGTGGAGATGATGAGTTACCGGAGCGTAAGCGACCGGCTTTAGCTAGTGTGATTGTAGAAGCTCTGAAGGTGGATAGTTTGCAGAAGCTCTGCTCCTCATTGGAACCTATTCTCCGTAGAGTTGTAAGTGAGGAAGTGGAGCGTGCTTTGGCAAAAATAGGTCCTGCTAGACTGACTGGAAGGTCTTCTCCTAAAAGGATTGAAGGCCCTGACGGCAGAAACTTGCAACTGCTCTTTAAGTCCAGATTGTCTCTTCCTCTATTCACTGGCGGGAAAGTGGAAGGTGAACAGGGTGCAGCAATCCATGTTGTGCTATATGATGCCGACACTGGTCATCTTGTAACATCTGGACCTGAAGCATTGTCAAAATTGGACATTGTTGTGCTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACAGAGGAAGAATTTGAAAGCCATGTGGTAAAAGAGCGTGAAGGAAAGAGGCCTCTATTGACTGGTGACCTGCAGGTTACCCTCAAGGAAGGTGTTGGAACACTTGGGGATTTGACCTTCACTGATAATTCAAGTTGGATAAGGAGCAGAAAGTTCAGACTTGGCTTAAAGGTGGCGTCGGGATTTTGTGAAGGCATACGCATTCGCGAAGCAAAAACTGAAGCTTTTACAGTTAAAGATCACCGAGGAGAATTGTATAAAAAACATTATCCACCTGCATTAAATGATGAGGTGTGGAGATTAGAGAAGATTGGAAAGGATGGATCGTTTCACAAACGGCTCAATAAACATGGAATATTCTCAGTTGAAGACTTCCTTCGGCTGGTGGTCCGAGATCCTCAAAATTTACGGAGTATCCTTGGAAGTGGCATGTCAAATAAGATGTGGGATGCTCTCTTAGAACATGCTAAGACCTGTGTCCTGAGCGGAAAGCATTATGTTTATTATCCCGAGGATACGAGAAATGTTGGCGTTGTTTTTAACAATATTTATGAGCTCAGTGGCCTTATTGCAGGGGAGCAATACTATTCAGCTGATTCTCTGTCTGATAGCCAGAAGCTTTATGTAGATACACTAGTGAAGAAAGCATATGAAAATTGGACTCAAGTTGTAGAGTATGATGGAAAGTCACTTGTGAGCTTTAAGCAGACTAAGAAGTCCAACACATCTCGGAATGAATTTCAAGGGGGTCATCTTGATCTTTCCAATACTTTAGATCATGAAATGTCACTATCTCGTATGCCGGTATCTGTTTCTTCGGAACAACCTCCTGTAGTGGATTCTGGACTATCAGTTGCAGGGTATAATGATCATACAGCCACAAGATTTCCAAACCAGACACAGTTTGTGAGTTCGAGTTCTCGAACGCATTTTGACAGCTCATTTACGCCTAACGAGTTTATTAGCACTTCTAACCAACTTCATAACACAAGAAATGACGATAGTGCTTTTGGATTGGCTCTTGGGCCTCCACAAACATCATCTTCAGGGTTCCAGGCCATTGGTTCTTCTATTCAGGACTCTAATCTGAATCCATTTGACTGGGCAAACAATAGAGACAGGGGAGTTGACGATTTCTTTTCAGAAGACGAGATCCGCATGAGAAGTCATGAGATGCTTGAAAATGAAGATATGCAACATTTATTGCGAATGTTCAGCATGGGAGGGCATACATCTGTTAACATGAATGATGAAGGTTTTTCATTCCCATCGTTCATGCCTTCACCAATGCCAAACTTTGATGATCGCAACCGCTCTGGAAAGGCTGTCGTGGGTTGGTTGAAGATCAAAGCTGCTATGCGGTGGGGCTTCTTCATCAGGAAGAAAGCGGCGGAGAGGCGTGCTCAGATTGTTGAGTTGGATGAGGAATAA 1911 43.28 MQTRYMERTNSMRDKRSLEGGDDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARLTGRSSPKRIEGPDGRNLQLLFKSRLSLPLFTGGKVEGEQGAAIHVVLYDADTGHLVTSGPEALSKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKHGIFSVEDFLRLVVRDPQNLRSILGSGMSNKMWDALLEHAKTCVLSGKHYVYYPEDTRNVGVVFNNIYELSGLIAGEQYYSADSLSDSQKLYVDTLVKKAYENWTQVVEYDGKSLVSFKQTKKSNTSRNEFQGGHLDLSNTLDHEMSLSRMPVSVSSEQPPVVDSGLSVAGYNDHTATRFPNQTQFVSSSSRTHFDSSFTPNEFISTSNQLHNTRNDDSAFGLALGPPQTSSSGFQAIGSSIQDSNLNPFDWANNRDRGVDDFFSEDEIRMRSHEMLENEDMQHLLRMFSMGGHTSVNMNDEGFSFPSFMPSPMPNFDDRNRSGKAVVGWLKIKAAMRWGFFIRKKAAERRAQIVELDEE 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46188838 46194917 + evm.model.ptg000008l.520 HCH8g1015 550113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1015 636 Pfam Calmodulin binding protein C-terminal domain 324 386 IPR046829 -
HCH8g1015 636 MobiDBLite consensus disorder prediction 1 29 - -
HCH8g1015 636 PANTHER OS02G0177800 PROTEIN 13 627 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
HCH8g1015 636 Pfam Calmodulin binding protein central domain 253 319 IPR046830 -
HCH8g1015 636 MobiDBLite consensus disorder prediction 8 29 - -
HCH8g1015 636 Pfam Calmodulin binding protein-like N-terminal domain 94 241 IPR046831 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0185 HCH-Chr3:1188505 HCH8g1015 HCH-Chr8:46188838 1.40E-92 dispersed
HCH8g0065 HCH-Chr8:3779333 HCH8g1015 HCH-Chr8:46188838 6.20E-53 dispersed
HCH8g1015 HCH-Chr8:46188838 HCH8g1360 HCH-Chr8:48407912 1.60E-89 dispersed
HCH8g1015 HCH-Chr8:46188838 HCH10g0903 HCH-Chr10:11543919 1.50E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1015 - - - 0.0