Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1022 ATGGCCGCCCTCCTCCAACTCATAAACCATGACATGGAAATCGAAATTTCAGCCGAGGTTCTTGTAGCTCGCGTTATCGATCTCCATGGAAGCATCTCCAAGCTTGAATGCCTTAGGCCTTGCAAGAAAGTGAATACCCTTTTCACTAACCTCGTCAACCTTTGCATTCTACCATCTTCTATAGATGTTTTAGCAATGCCACCACAATTGCAGGCCATGCGAGAGAGGCTTATAATTCTCTGCGGTCGAGCCGAGGGTCTTCTCGAACTCGAATTCTCAAATTTACTCAACAAAATCCCCAAACCTCTCAACAATCTCACACTCTTCCCATACTATGACAACTATGTCAAATTAGCCCATCTTGAAAACAGCATTTTGAATGACAATGGAGTGGTGAATCCAAAGAAAGTAGCCTTCATAGGGTCTGGTCCATTGCCTCTAACTTCCCTTGTAATGGCCACACACCACATGAAAACGACGCATTTCGACAATTTCGATGTTGACGAAAAGGCGAACCAAGTGGCCGAGAAAATAGTAGCTTCCGATGCCGAGCTCGAGAAGAGAATGAAGTTTTGGACGAGGGACATAGTTGAGGTGAGGGAGGAGCTTGGAAATTATGATTGTGTTTTTTTGGCAGCTCTTGTGGGAATGAATAAAGAAGAGAAAGTGAAGATTTTAGGACATATAAGAAAATATATGAAAGAAGGTGGGATTATGGTTGTGAGAAGTGCCAAAGGAGCAAGAGCCTTTCTCTACCCTGTGGTGGAGGCTCATGACTTGGTTGGATTTGAGATTCTCTCCATTTTTCATCCCACTGATGACGTGGTCAATTCGGTCATCTTAGTCCGCAAGCCCAATATATGA 864 43.87 MAALLQLINHDMEIEISAEVLVARVIDLHGSISKLECLRPCKKVNTLFTNLVNLCILPSSIDVLAMPPQLQAMRERLIILCGRAEGLLELEFSNLLNKIPKPLNNLTLFPYYDNYVKLAHLENSILNDNGVVNPKKVAFIGSGPLPLTSLVMATHHMKTTHFDNFDVDEKANQVAEKIVASDAELEKRMKFWTRDIVEVREELGNYDCVFLAALVGMNKEEKVKILGHIRKYMKEGGIMVVRSAKGARAFLYPVVEAHDLVGFEILSIFHPTDDVVNSVILVRKPNI 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46226998 46227861 - evm.model.ptg000008l.513 HCH8g1022 550120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1022 287 Coils Coil 182 202 - -
HCH8g1022 287 Pfam Nicotianamine synthase protein 18 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH8g1022 287 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 106 243 IPR029063 -
HCH8g1022 287 Gene3D Vaccinia Virus protein VP39 19 286 IPR029063 -
HCH8g1022 287 PANTHER NICOTIANAMINE SYNTHASE 3 15 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH8g1022 287 CDD AdoMet_MTases 165 241 - -
HCH8g1022 287 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 13 287 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1022 K05953 - - csv:101209464 436.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0054 HCH-Chr8:2965696 HCH8g1022 HCH-Chr8:46226998 7.20E-75 dispersed
HCH8g1022 HCH-Chr8:46226998 HCH10g0926 HCH-Chr10:12181963 9.90E-76 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0926 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 65.5 4.2e-99 358.2
HCH8g0054 . 1 323 Nicotianamine Synthase Gene Family AT1G09240 57.1 2.1e-95 345.9
HCH10g0927 . 5 334 Nicotianamine Synthase Gene Family AT1G09240 55.4 4.5e-93 338.2
HCH8g1022 . 19 284 Nicotianamine Synthase Gene Family AT1G09240 54.8 3.2e-75 278.9
HCH10g0926 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 63.8 1.6e-98 356.3
HCH8g0054 . 3 320 Nicotianamine Synthase Gene Family AT1G56430 55.9 1.4e-97 353.2
HCH10g0927 . 5 334 Nicotianamine Synthase Gene Family AT1G56430 55.8 6.3e-95 344.4
HCH8g1022 . 21 284 Nicotianamine Synthase Gene Family AT1G56430 54.5 7.7e-77 284.3
HCH10g0927 . 1 281 Nicotianamine Synthase Gene Family AT5G04950 60.9 7.6e-93 337.4
HCH10g0926 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 60.2 3.8e-92 335.1
HCH8g0054 . 1 323 Nicotianamine Synthase Gene Family AT5G04950 53.7 1.4e-91 333.2
HCH8g0054 . 1 323 Nicotianamine Synthase Gene Family AT5G56080 53.8 1.3e-92 336.7
HCH10g0926 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 60.1 5.5e-91 331.3
HCH10g0927 . 1 281 Nicotianamine Synthase Gene Family AT5G56080 59.6 3.5e-90 328.6
HCH8g1022 . 20 284 Nicotianamine Synthase Gene Family AT5G56080 50.7 2.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125