Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1022 ATGGCCGCCCTCCTCCAACTCATAAACCATGACATGGAAATCGAAATTTCAGCCGAGGTTCTTGTAGCTCGCGTTATCGATCTCCATGGAAGCATCTCCAAGCTTGAATGCCTTAGGCCTTGCAAGAAAGTGAATACCCTTTTCACTAACCTCGTCAACCTTTGCATTCTACCATCTTCTATAGATGTTTTAGCAATGCCACCACAATTGCAGGCCATGCGAGAGAGGCTTATAATTCTCTGCGGTCGAGCCGAGGGTCTTCTCGAACTCGAATTCTCAAATTTACTCAACAAAATCCCCAAACCTCTCAACAATCTCACACTCTTCCCATACTATGACAACTATGTCAAATTAGCCCATCTTGAAAACAGCATTTTGAATGACAATGGAGTGGTGAATCCAAAGAAAGTAGCCTTCATAGGGTCTGGTCCATTGCCTCTAACTTCCCTTGTAATGGCCACACACCACATGAAAACGACGCATTTCGACAATTTCGATGTTGACGAAAAGGCGAACCAAGTGGCCGAGAAAATAGTAGCTTCCGATGCCGAGCTCGAGAAGAGAATGAAGTTTTGGACGAGGGACATAGTTGAGGTGAGGGAGGAGCTTGGAAATTATGATTGTGTTTTTTTGGCAGCTCTTGTGGGAATGAATAAAGAAGAGAAAGTGAAGATTTTAGGACATATAAGAAAATATATGAAAGAAGGTGGGATTATGGTTGTGAGAAGTGCCAAAGGAGCAAGAGCCTTTCTCTACCCTGTGGTGGAGGCTCATGACTTGGTTGGATTTGAGATTCTCTCCATTTTTCATCCCACTGATGACGTGGTCAATTCGGTCATCTTAGTCCGCAAGCCCAATATATGA 864 43.87 MAALLQLINHDMEIEISAEVLVARVIDLHGSISKLECLRPCKKVNTLFTNLVNLCILPSSIDVLAMPPQLQAMRERLIILCGRAEGLLELEFSNLLNKIPKPLNNLTLFPYYDNYVKLAHLENSILNDNGVVNPKKVAFIGSGPLPLTSLVMATHHMKTTHFDNFDVDEKANQVAEKIVASDAELEKRMKFWTRDIVEVREELGNYDCVFLAALVGMNKEEKVKILGHIRKYMKEGGIMVVRSAKGARAFLYPVVEAHDLVGFEILSIFHPTDDVVNSVILVRKPNI 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46226998 46227861 - evm.model.ptg000008l.513 HCH8g1022 550120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1022 287 Coils Coil 182 202 - -
HCH8g1022 287 Pfam Nicotianamine synthase protein 18 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH8g1022 287 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 106 243 IPR029063 -
HCH8g1022 287 Gene3D Vaccinia Virus protein VP39 19 286 IPR029063 -
HCH8g1022 287 PANTHER NICOTIANAMINE SYNTHASE 3 15 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH8g1022 287 CDD AdoMet_MTases 165 241 - -
HCH8g1022 287 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 13 287 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0054 HCH-Chr8:2965696 HCH8g1022 HCH-Chr8:46226998 7.20E-75 dispersed
HCH8g1022 HCH-Chr8:46226998 HCH10g0926 HCH-Chr10:12181963 9.90E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1022 K05953 - csv:101209464 436.032