Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1024 ATGGAATCATTCAATCATCAACCTACAGCCCACCCAGAATTCATATTCCGATCAAAACTCCCTGATATTACCATCCCAACCCATCTCCCCTTACACACTTATTGCTTCGAAAAACTTTCCCAATTCAAAAACCGTCCATGCATTATCAATGGAGCCTCCGGCGATACCTACACCTACGGTGAAGTCGAGCTCACCGCACGTAGAGTCGCCGCCGGCCTCCACAAGCTCGGCATCCGAAAAGGTGACGTCATCATGCTTTTACTACAAAACAGTCCACAATTCATCTTTGCCTTCCTCGGCGCTTCTTACCTAGGCGCTACCTGCACCACAGCCAACCCTTTCTTTACCCCGACCGAGGTTGCGAAACAAGCGACCTCGTCCGGAGTCAAATTGATCATAACTCAATCTGTTTTCGCCGAAAAAGTAAGGAACTTCTCTAAAGAAAACAACATCAAACTCGTATACATCGACTCAGAATCGGAATCGGAATCAGAATTACATTTCTCCAGTTTGACTCAATCGGACGAGAATGAAATGCCGGTAGTGGAAATCAACCCCGACGATGTCGTGGCGTTACCTTATTCGTCCGGAACGACGGGGCTACCGAAGGGAGTGATGTTGACGCATAAGGGTTTGGTGACAAGCGTAGCACAACAAGTTGACGGAGAGAATCCGCATTTGTACTTACGTAGTGACGACGTGGTTTTGTGTGTTCTTCCTTTGTTTCATATTTATTCCTTGAATTCGGTAATGATGTGTTCTTTGAGAGTGGGAGCTGCGATTTTGATTCTACAAAAGTTTGACATAAATTCTCTCATGGAGTTGGTGCCTAAATATAAGGTGACTGTGGCGCCATTGGTTCCTCCAATTGTTTTGGCAATTGCGAAGAGCTTAGCTATCGAAAATTGCGACATGTCATCGATAAGGATAGTATTGTCGGGGGCAGCGCCGTTGGGGAAGGAGCTTGAAGATGCCGTTAGAGCTAAGCTTCCACATGCCACACTCGGACAGGGATATGGAATGACAGAGACAGGGGCAGTGTTGACGATGTCATTGGCATTTGCTAAGGAACCGTTCAAGATAAAATCAGGGGCGTGTGGAACAGTGATGAGAAACTTAGAGGTGAAGATCATCAAACCTGATACAGGCGTGTCTCTTCCAAAAAATCAACCTGGAGAGATTTGCATTAGGAGCCCTCAGATTATGAAAGGATATCTGAATGATGAAGAGGCAACGAGGAGTATAATTGACGAAAACGGATGGCTGCACTCCGGCGACATCGGTTTCATCGACGATGACGACGAGCTTTTCATCGTCGACCGCCTAAAGGAACTGATCAAATACAAAGGATTCCAAGTGGCCCCGGCGGAGCTTGAAGCCATGCTCGTTTCACACTCCCACATCACTGATGCCGCCGTCGTTCCGATGAAAGATGAAGTAGCTGGAGAGGTTCCTGTTGCATTCATCGTCAGATCCGACGGCTCCAATATCACTGCTGACGAAATCAAACAATATATCTCTAAACAGGTTGTGTTTTATAAGAGGATCAATCGAGTTTTCTTCGTGGAAACAATTCCAAAAAGTCCATCAGGAAAAATATTGCGAAAAGAACTAAGATCTTGGCTCGCAGACAATGTTTCAGATATGAATAAATCGTGTGTTGTTTCCCCCCTTTAA 1677 45.8 MESFNHQPTAHPEFIFRSKLPDITIPTHLPLHTYCFEKLSQFKNRPCIINGASGDTYTYGEVELTARRVAAGLHKLGIRKGDVIMLLLQNSPQFIFAFLGASYLGATCTTANPFFTPTEVAKQATSSGVKLIITQSVFAEKVRNFSKENNIKLVYIDSESESESELHFSSLTQSDENEMPVVEINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPHLYLRSDDVVLCVLPLFHIYSLNSVMMCSLRVGAAILILQKFDINSLMELVPKYKVTVAPLVPPIVLAIAKSLAIENCDMSSIRIVLSGAAPLGKELEDAVRAKLPHATLGQGYGMTETGAVLTMSLAFAKEPFKIKSGACGTVMRNLEVKIIKPDTGVSLPKNQPGEICIRSPQIMKGYLNDEEATRSIIDENGWLHSGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEAMLVSHSHITDAAVVPMKDEVAGEVPVAFIVRSDGSNITADEIKQYISKQVVFYKRINRVFFVETIPKSPSGKILRKELRSWLADNVSDMNKSCVVSPL 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46243694 46246600 - evm.model.ptg000008l.511 HCH8g1024 550122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1024 558 Gene3D - 7 442 IPR042099 -
HCH8g1024 558 FunFam 4-coumarate--CoA ligase 2 444 545 - -
HCH8g1024 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 539 - GO:0016405(PANTHER)
HCH8g1024 558 SUPERFAMILY Acetyl-CoA synthetase-like 11 550 - -
HCH8g1024 558 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
HCH8g1024 558 Gene3D - 443 549 IPR045851 -
HCH8g1024 558 CDD 4CL 25 538 - -
HCH8g1024 558 Pfam AMP-binding enzyme 37 406 IPR000873 -
HCH8g1024 558 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 443 - -
HCH8g1024 558 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0350 HCH-Chr2:45029420 HCH8g1024 HCH-Chr8:46243694 1.80E-193 dispersed
HCH3g1211 HCH-Chr3:44340792 HCH8g1024 HCH-Chr8:46243694 1.30E-113 dispersed
HCH4g1241 HCH-Chr4:8472513 HCH8g1024 HCH-Chr8:46243694 1.10E-213 dispersed
HCH5g0231 HCH-Chr5:1325541 HCH8g1024 HCH-Chr8:46243694 2.00E-88 dispersed
HCH5g0581 HCH-Chr5:3998154 HCH8g1024 HCH-Chr8:46243694 9.10E-24 dispersed
HCH6g0312 HCH-Chr6:4851461 HCH8g1024 HCH-Chr8:46243694 6.70E-214 dispersed
HCH6g0597 HCH-Chr6:35717560 HCH8g1024 HCH-Chr8:46243694 1.10E-13 dispersed
HCH7g1189 HCH-Chr7:44818638 HCH8g1024 HCH-Chr8:46243694 6.20E-31 dispersed
HCH14g1128 HCH-Chr14:38177026 HCH8g1024 HCH-Chr8:46243694 1.60E-28 transposed
HCH10g0258 HCH-Chr10:2150478 HCH8g1024 HCH-Chr8:46243694 2.30E-222 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1024 K01904 - cit:102629456 826.239