Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g1037 | ATGAATAATTCTTCTTCCAACTCTCAAAACTGGCTTGGATTCTCTCTCTCTAACAATCCCGACTTAACCCATTCTCAATCTTCTAATCTCTCTCTTTTCCAAGATCATCCTCATGCAACTGATCTTTCTATCTTCACCGGCGCCGGAGACGGTAACCCTAAGCTTGAGGACTTTCTCGGCGGTTGTTCTTCCACTACCACCGCAACCGCCGACGTATCTCACCCTCCGTTTCAGTTCTCAACTCCGGCGAGTTTTTGTGAAGAAACTTCCTTGTGTGATTCTGATCTCAAAACCATCGCTGCTAGTTTCCTCTGTGGATTCTCTGGTACTGAGCAAATAACCGAAACTCCAACCCAGATTCAGCAGCAACAACAGATATCGCATCCTTCGCCGCGTCTGCTTCCCTCGGAGACGACGGCGCCGCCCAAGAAGGCTGCTGATACTTTTGGCCAACGTACCTCGATTTATCGTGGTGTTACACGGCATAGATGGACTGGTAGATATGAAGCTCATTTATGGGATAACAGTTGTAGAAGGGAAGGTCAAAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTTGGATTACGAAAAAGAATTGGAGGATATGAAGAACATGACTAGACAGGAATTTGTTGCGTCACTTAGAAGGAAAAGTAGTGGTTTTTCTAGAGGAGCTTCAATTTACAGAGGAGTAACAAGGCATCACCAACATGGTAGATGGCAAGCAAGAATAGGAAGAGTTGCAGGCAACAAAGATCTCTACCTTGGAACATTCAGTACTCAGGAAGAAGCTGCCGAGGCATATGATATTGCTGCCATCAAATTCAGAGGCCTAAATGCTGTCACCAACTTCGACATTAGCCGCTACGACATAAAGACCATTGCTAGAACCAACCTCCCCATTGGAGGAATGTCTGGCAGCAAATCGAAGAACTCGCCAGACTCCGCGTCTGAGAGCAAAAGCATGGACGGTGGAAGCCGATCAGCCGATGAACGAGATCACCATCATTCTCCAGCATCCCCCACCACAACTTTCATGTCTCAGCCTGCTAATAATTCCTCCACTTTAAGCTTTGCAATACCAATAAAACAAGACTCATCAGATCAATACTGGTCAATCCTTGGCTACCACCCCAACACCACCAGCTTTAGTAGCAGCATATCCAGAAACGATAATATCTCACCACCGGCATTTCAACAATCTTCAACCTCATCCGGAACCATGATGTTTCAGGCCAACCCCACGATTCCCTCCATCGCCATCGACCTGCCATCGGCTAGTTCATCGCTCAACGAGCAGAACGATTGCGGTCTATACGGTGGCACATATGTTCATCAGGAGCAACCATGTTGTGAGATGGAAAATGGTTCGAATTCCATTCAATACCCCACAGCCATTGCATTGAGCAGTGGGATTAGCATTGATATGGGGCATCAATCAATGCGAGGATTCCAATCTCACGTAAAGCCAAGTTTTTTTCAGACCCCAATATTCGGAATTGAATGA | 1596 | 46.43 | MNNSSSNSQNWLGFSLSNNPDLTHSQSSNLSLFQDHPHATDLSIFTGAGDGNPKLEDFLGGCSSTTTATADVSHPPFQFSTPASFCEETSLCDSDLKTIAASFLCGFSGTEQITETPTQIQQQQQISHPSPRLLPSETTAPPKKAADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVLDYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDIKTIARTNLPIGGMSGSKSKNSPDSASESKSMDGGSRSADERDHHHSPASPTTTFMSQPANNSSTLSFAIPIKQDSSDQYWSILGYHPNTTSFSSSISRNDNISPPAFQQSSTSSGTMMFQANPTIPSIAIDLPSASSSLNEQNDCGLYGGTYVHQEQPCCEMENGSNSIQYPTAIALSSGISIDMGHQSMRGFQSHVKPSFFQTPIFGIE | 531 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 46330493 | 46333130 | + | evm.model.ptg000008l.498 | HCH8g1037 | 550135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g1037 | 531 | SUPERFAMILY | DNA-binding domain | 154 | 222 | IPR016177 | GO:0003677(InterPro) | |
HCH8g1037 | 531 | Pfam | AP2 domain | 258 | 307 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | Pfam | AP2 domain | 156 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | MobiDBLite | consensus disorder prediction | 115 | 146 | - | - | |
HCH8g1037 | 531 | MobiDBLite | consensus disorder prediction | 354 | 368 | - | - | |
HCH8g1037 | 531 | FunFam | AP2-like ethylene-responsive transcription factor | 256 | 317 | - | - | |
HCH8g1037 | 531 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 154 | 223 | - | - | |
HCH8g1037 | 531 | Gene3D | AP2/ERF domain | 257 | 317 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | Gene3D | AP2/ERF domain | 155 | 223 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | SUPERFAMILY | DNA-binding domain | 256 | 317 | IPR016177 | GO:0003677(InterPro) | |
HCH8g1037 | 531 | CDD | AP2 | 256 | 317 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | ProSiteProfiles | AP2/ERF domain profile. | 155 | 221 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | MobiDBLite | consensus disorder prediction | 330 | 353 | - | - | |
HCH8g1037 | 531 | MobiDBLite | consensus disorder prediction | 330 | 380 | - | - | |
HCH8g1037 | 531 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 88 | 407 | - | - | |
HCH8g1037 | 531 | MobiDBLite | consensus disorder prediction | 115 | 134 | - | - | |
HCH8g1037 | 531 | ProSiteProfiles | AP2/ERF domain profile. | 257 | 315 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | SMART | rav1_2 | 155 | 227 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | SMART | rav1_2 | 257 | 321 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | CDD | AP2 | 154 | 223 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | PRINTS | Ethylene responsive element binding protein signature | 156 | 167 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g1037 | 531 | PRINTS | Ethylene responsive element binding protein signature | 297 | 317 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0569 | HCH-Chr4:3729795 | HCH8g1037 | HCH-Chr8:46330493 | 2.10E-92 | dispersed | |
HCH6g0075 | HCH-Chr6:918144 | HCH8g1037 | HCH-Chr8:46330493 | 5.00E-97 | dispersed | |
HCH8g0965 | HCH-Chr8:45789040 | HCH8g1037 | HCH-Chr8:46330493 | 1.90E-68 | dispersed | |
HCH8g1037 | HCH-Chr8:46330493 | HCH9g1376 | HCH-Chr9:45279327 | 3.00E-46 | dispersed | |
HCH10g0603 | HCH-Chr10:4896967 | HCH8g1037 | HCH-Chr8:46330493 | 1.50E-101 | transposed | |
HCH11g0766 | HCH-Chr11:37185694 | HCH8g1037 | HCH-Chr8:46330493 | 8.30E-97 | transposed | |
HCH2g1390 | HCH-Chr2:55674648 | HCH8g1037 | HCH-Chr8:46330493 | 7.70E-94 | transposed | |
HCH8g1037 | HCH-Chr8:46330493 | HCH9g0209 | HCH-Chr9:1233045 | 2.00E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34045 | PF00847 | AP2 | 4.00E-13 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g1037 | K09285 | - | csv:101210453 | 541.962 |