Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1037 ATGAATAATTCTTCTTCCAACTCTCAAAACTGGCTTGGATTCTCTCTCTCTAACAATCCCGACTTAACCCATTCTCAATCTTCTAATCTCTCTCTTTTCCAAGATCATCCTCATGCAACTGATCTTTCTATCTTCACCGGCGCCGGAGACGGTAACCCTAAGCTTGAGGACTTTCTCGGCGGTTGTTCTTCCACTACCACCGCAACCGCCGACGTATCTCACCCTCCGTTTCAGTTCTCAACTCCGGCGAGTTTTTGTGAAGAAACTTCCTTGTGTGATTCTGATCTCAAAACCATCGCTGCTAGTTTCCTCTGTGGATTCTCTGGTACTGAGCAAATAACCGAAACTCCAACCCAGATTCAGCAGCAACAACAGATATCGCATCCTTCGCCGCGTCTGCTTCCCTCGGAGACGACGGCGCCGCCCAAGAAGGCTGCTGATACTTTTGGCCAACGTACCTCGATTTATCGTGGTGTTACACGGCATAGATGGACTGGTAGATATGAAGCTCATTTATGGGATAACAGTTGTAGAAGGGAAGGTCAAAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTTGGATTACGAAAAAGAATTGGAGGATATGAAGAACATGACTAGACAGGAATTTGTTGCGTCACTTAGAAGGAAAAGTAGTGGTTTTTCTAGAGGAGCTTCAATTTACAGAGGAGTAACAAGGCATCACCAACATGGTAGATGGCAAGCAAGAATAGGAAGAGTTGCAGGCAACAAAGATCTCTACCTTGGAACATTCAGTACTCAGGAAGAAGCTGCCGAGGCATATGATATTGCTGCCATCAAATTCAGAGGCCTAAATGCTGTCACCAACTTCGACATTAGCCGCTACGACATAAAGACCATTGCTAGAACCAACCTCCCCATTGGAGGAATGTCTGGCAGCAAATCGAAGAACTCGCCAGACTCCGCGTCTGAGAGCAAAAGCATGGACGGTGGAAGCCGATCAGCCGATGAACGAGATCACCATCATTCTCCAGCATCCCCCACCACAACTTTCATGTCTCAGCCTGCTAATAATTCCTCCACTTTAAGCTTTGCAATACCAATAAAACAAGACTCATCAGATCAATACTGGTCAATCCTTGGCTACCACCCCAACACCACCAGCTTTAGTAGCAGCATATCCAGAAACGATAATATCTCACCACCGGCATTTCAACAATCTTCAACCTCATCCGGAACCATGATGTTTCAGGCCAACCCCACGATTCCCTCCATCGCCATCGACCTGCCATCGGCTAGTTCATCGCTCAACGAGCAGAACGATTGCGGTCTATACGGTGGCACATATGTTCATCAGGAGCAACCATGTTGTGAGATGGAAAATGGTTCGAATTCCATTCAATACCCCACAGCCATTGCATTGAGCAGTGGGATTAGCATTGATATGGGGCATCAATCAATGCGAGGATTCCAATCTCACGTAAAGCCAAGTTTTTTTCAGACCCCAATATTCGGAATTGAATGA 1596 46.43 MNNSSSNSQNWLGFSLSNNPDLTHSQSSNLSLFQDHPHATDLSIFTGAGDGNPKLEDFLGGCSSTTTATADVSHPPFQFSTPASFCEETSLCDSDLKTIAASFLCGFSGTEQITETPTQIQQQQQISHPSPRLLPSETTAPPKKAADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVLDYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDIKTIARTNLPIGGMSGSKSKNSPDSASESKSMDGGSRSADERDHHHSPASPTTTFMSQPANNSSTLSFAIPIKQDSSDQYWSILGYHPNTTSFSSSISRNDNISPPAFQQSSTSSGTMMFQANPTIPSIAIDLPSASSSLNEQNDCGLYGGTYVHQEQPCCEMENGSNSIQYPTAIALSSGISIDMGHQSMRGFQSHVKPSFFQTPIFGIE 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46330493 46333130 + evm.model.ptg000008l.498 HCH8g1037 550135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1037 531 SUPERFAMILY DNA-binding domain 154 222 IPR016177 GO:0003677(InterPro)
HCH8g1037 531 Pfam AP2 domain 258 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 Pfam AP2 domain 156 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 MobiDBLite consensus disorder prediction 115 146 - -
HCH8g1037 531 MobiDBLite consensus disorder prediction 354 368 - -
HCH8g1037 531 FunFam AP2-like ethylene-responsive transcription factor 256 317 - -
HCH8g1037 531 FunFam AP2-like ethylene-responsive transcription factor ANT 154 223 - -
HCH8g1037 531 Gene3D AP2/ERF domain 257 317 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 Gene3D AP2/ERF domain 155 223 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 SUPERFAMILY DNA-binding domain 256 317 IPR016177 GO:0003677(InterPro)
HCH8g1037 531 CDD AP2 256 317 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 ProSiteProfiles AP2/ERF domain profile. 155 221 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 MobiDBLite consensus disorder prediction 330 353 - -
HCH8g1037 531 MobiDBLite consensus disorder prediction 330 380 - -
HCH8g1037 531 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 407 - -
HCH8g1037 531 MobiDBLite consensus disorder prediction 115 134 - -
HCH8g1037 531 ProSiteProfiles AP2/ERF domain profile. 257 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 SMART rav1_2 155 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 SMART rav1_2 257 321 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 CDD AP2 154 223 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 PRINTS Ethylene responsive element binding protein signature 156 167 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g1037 531 PRINTS Ethylene responsive element binding protein signature 297 317 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0569 HCH-Chr4:3729795 HCH8g1037 HCH-Chr8:46330493 2.10E-92 dispersed
HCH6g0075 HCH-Chr6:918144 HCH8g1037 HCH-Chr8:46330493 5.00E-97 dispersed
HCH8g0965 HCH-Chr8:45789040 HCH8g1037 HCH-Chr8:46330493 1.90E-68 dispersed
HCH8g1037 HCH-Chr8:46330493 HCH9g1376 HCH-Chr9:45279327 3.00E-46 dispersed
HCH10g0603 HCH-Chr10:4896967 HCH8g1037 HCH-Chr8:46330493 1.50E-101 transposed
HCH11g0766 HCH-Chr11:37185694 HCH8g1037 HCH-Chr8:46330493 8.30E-97 transposed
HCH2g1390 HCH-Chr2:55674648 HCH8g1037 HCH-Chr8:46330493 7.70E-94 transposed
HCH8g1037 HCH-Chr8:46330493 HCH9g0209 HCH-Chr9:1233045 2.00E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34045 PF00847 AP2 4.00E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1037 K09285 - csv:101210453 541.962