Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1049 ATGGCTGCTAAACATAAGAAAGAGGAGGAGGAGACGGCGGCGAGAAAGAACGGTAGCGGCGGCGGGTTGCAAAGAAGTTACTTTGATGTTCTTGGGATTTGTTGTGCTTCAGAAATCTCAGTGATAGAAAACATATTGAAGCCTCTTGAAGGGGTTAAAGAGGTTACTGTCATTGTTACCACAAGAACAGTCATTGTTGTCCATGATAACCTTCTTATTTCTCAGTCTCAAATTGTTAAAGCTCTGAACCAAGCGAGGCTGGAAGCAAATGTGAGAGCATACGGAGAACACAAAAACCACCGGAAAAAATGGCCAAGCCCGTACTCGGCGGCAAGTGGGCTGCTTCTGCTGCTATCGCTTCTCAAATTTGTGAACCCAATCTTTCAATGGCTGGCTGTGGCCGCCGTTGCCGTTGGCATCTGGCCCATCGCTTTGAAAAGCTTCGCCGCCATTCGCAATTTCAGGATTGATATCAACATTCTTGCTCTCATTGCAGTGGTAGGGACAATTGCCATGAAGGATTATTTGGAAGCTGCCACTATTGTTTTCCTCTTCTCCATTGCTGAATGGCTTGAGTCCAGAGCCAGCCACAAGGCCAATGCTGTCATGTCTTCCCTTCTAAGCATAGCTCCTCAGAAAGCAGTCCTTGCTGATTCCGGTGAAGTCGTGGCCACCGACGAGGTCAAGTTGGGCAGTCTCCTGGCTGTAAAGCCCGGCGAAGTTATTCCCATTGATGGAATTGTTGTGGAAGGAAAATGTGAAGTTGATGAGAAAACACTTACTGGTGAATCTTTCCCAGTTGCCAAACAAAAGAATTCCATTGTTTGGGCCGGTACTATAAATCTAAATGGCTATGTTACTGTGAAGACTACTGTTCTTTCCCAAGACTGTGTGGTGGCTAAAATGGCCAAGCTGGTTGAAGATGCCCAGAGCAACAAATCTAGGATTCAAAGGTTCATTGACAAATGTGCCAAATACTATACTCCAGCTGTTCTTATCGTATCGACTTGCATAGCGGTGATACCCGCTGCGTTAAGACTTCACAACCGAAAACTTTGGTTTCACTTAGCTCTGGTTGTGTTAGTAAGTGCATGTCCATGTGCACTCATCCTTTCCACCCCTGTTGCCACTTTCTGTGCACTTACAAAGGCAGCTACCTCTGGCCTTCTAATCAAAGGGGGAGACTACCTTGAAACTCTGGCTAGAATTAAGGTCATGGCTTTTGATAAAACTGGGACAATAACAAGAGGTGAATTTACAGTCACCAAATTTCAAGCTCTTGATCAGATCAATATTAGCTTAAACACATTGCTTTACTGGGTTTCAAGCATTGAAAGCAAATCTAGTCATCCAATGGCAACTGCACTTGTTGACCATGGAAGATCACTTTCCATTGATCCAAAACCCGAGACTGTGGACGACTTCCAAAATTTTCCTGGAGAAGGTGTTCATGGGAAAATCGATGGGAAAGACATCTATATTGGAAATCGAAAAATTGCTATAAGAGCGAACTGCACAACAGTTCCAGAGATCAAAGATGATGCTCAGGATGGAAGGACTGTTGGATACATATTCTGTGGATCTACCCCTGCTGGAATTTTTAGTCTTTCTGATACATGTCGAAGAGGAGCTAAGGAGGCCATGGAAGAGCTCCAATCACTTGGTATAAAAACAGCTATGCTCACTGGAGATTGTTCTGCATCAGCCTTGCAAGCACAAAAGGAACTCGGGAAGGCTCTACAGATAGTCCATGCAGAACTATTACCTGAAGACAAGACAAGACTCATCAATGACTTCAAAAGGGAGGGACGAACGGCTATGATTGGAGACGGTTTAAATGATGCCCCTGCCTTAGCTACAGCTGATATCGGCATATCAATGGGAATTTCAGGTTCGGCCCTCGCAATAGAAACTGGAGATGTGATCCTCATGTCTAATGACATCAGGAAAATTCCAAAAGTCATTCAACTTGCAAGAAGAGCTCGGATGAAAGTAATTGAAAATGTAATCTTGGCAATCACTCCTAGAATTGCTATCCTTGGCCTGGCATTTGCTGGTCACCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTTGGTACCTGCGTGCTAGTTATCCTCAACAGCATGCTCCTACTGCGAGGAACTGGCAAACACACAGGGAAGGCTGGCAAATCTGCTGCTACTGAGTGTACCTATAAACGAGAATGCTGTAATGTTAATAGCAATTTTGATCAACATGATAATTATGTCCTGAATCTTGAAAGCGCCGTTGATGGTTTCCACTCTTCTAACCATCTTGTGCGTGAGGACTGTTGTGCTAGCAAGAAAATTCAGGAGGGCTCCTTATCTCAGAACTGTGCTTCCAAGTGTTGCTCTAGGACTACCAATTCGAGTTCGTGCAAGAAAATTAAATCTGTGGAGTCAACTTCTAAGCAAGATGATTCTGCAGGCTGCGTAAAACTCAATGAACGTGGATGTTGCATTAATAATAACCAATCTGCTCAACGTGACCGCCACACCTACTCGTCAAGCACTGATCATCAGATCAAGGACAACTGTTGCTCTCAACAGAATATACCAGAGTTTTGCTTGCCTCAGAAGTGTGCCTCAAAGTGTCAGTCTAAAACTTCCATTTCAAGTTCATGTGAGGAAATCAAGTGCACAAAATCAACTTTGATGCTAGATGGGTCTGCAGGAAGTGCGGAGCTCTATGAAAGTGGATGCTGTACCCGTAGTAGCAAATCTGTTCAACTTGATCATCATATTATTCAAATTCCTGATGCAAATGCCAGTAACAGCCACTCATGTAGTCCCGGTCATCATATTCGTAATGATTGTTGCTCTCAAGAGAACACTCAAAATATTTCTTTGCCTCAGTCCCAGTGTCAGTCTAAGACCTGCAATTCAAGTTCATGTCAGAAAACCAAATGTGGGGACTCAACGGTGAGGCAAGACGAATGTACAGGCAGTGTGGAACTCCAAGACCAAAAGAATTGCAACATTGGAAGGTTTGACACTTCTGATTTTGATTTGGAATCACAGGGAAAGCTCAACAACAATTTCATTGGACCTTGTGCATCAGTGAGTTTATGCACAAAAGATAATTGCTGTGACAAGAGTGCAAAGATAGGTGAGTGTGCAAAAGACGATGGATGCCAGGAAGTCAAACCCCGCCTTTGCAATGCTGCTTGTTGTGAAGAGAATGGAGGATCAAATCGAGATGATGGTGAAGGCAATTTGAAGCTACCTCAGTCAAAGTGTCAGTCTAAGACTTGCAATTCAAGTTCATGTGGGAAAACCAAATGTGGGGACTCAATGGTGAGGCAAGAAGAGTGTACAGGAAGTTTGGAACTCCAAGACCAAAACCATTGCAACCTTAGAAGGTTTAACACTTCTAATTTTGATTTGGAATCACTCAACAAGAATTTCATTGGACCTTGTAGATCAGTGAGCTTATGCACAGAAGATAAATGCTGTGACAACGGTGCAAAGACAGGTGAGCTTGCAAAAGCCGATGGATGCCAGGAAGTTAAACTCCACCCTTGCAATGCTACTTGTTGTGAAAAGAATGGAGGATCAAATAGCAATGATGATAAAGACTATTTGAATCTGCCTGAGTCAAAGTGTCAGTCTAAAACCTCCAATTCCAGTTCATGTGGAGAGTTTACTTTGAGGCAAGGTGAGGGTATCGGAAGTCTGAAACTCCAAGACCAAAATTATTGTAACCTTGGAAGGTTTGACACTTCTGATTTTGACTTGGACTCACAGGAAAAGCTCAACAACAATTTCATTGGACCTTGTAGGCCAGTAAGCTTATGCACGGAAGATAAATGCTGTGACAAGGGTGCAAAGATAGGGAAGCATGGAAAAGCCGATGGATGCCAGGAAGTTAAACTCCGCCCTTGCAACGCTACATGTTGTGAAAATAATGGAGAATCAAATAGAGATGGTGGTGAAGACCCTTTGAATCTACCTCAGTCAAAGTGTCAGTCTAAGACCTGCAATTCAAGTTCATGTACGGACTCAGCGGTGAGGCAAGATGAATGTATAGGCAGTCTGGAACTCCAAAATCAAAAGCATTGCAACCTTGGAAGGTTTGACACTTTTGATCTTGACTTGGAATCCAAGGAAAAACTTAACAACAATTGCAGACCTTGCAGAGCAGTAAGCTGCACAGAAGATAAATGCAGTAACAAGGTTGCAAAGATAGGTGATCATGCAGATGCCGATGGATGCGAAGAAGTCAAACTCGGTCTTTGCAATGCTACTTGTTGTGAAAAGAAGAGAAATGATAGAGATGGTGATGAACACCATTCAAATCTTCAACATGAAGGGGTGCAGCATGATTTGAAGGCATGTCATGGAGATTTTGGTGGAGCATTTCACACAAGTGAAGCTATGGAAAAGAGAGAAACAATAAACGGTTGTAAAAGCTGCAAAAAGGAATGGCCAGAACTGAAAATTGGGCAATCTTGTGCAGGTTTGGAGAAGAGAGAAGTGGGTGGGTGTTGTAAGAGTTACATGAAGGAATGTTGTAGGAAAAAGCATGGAGATATCGGGACGACAGTCGGAGGAGGCTTAAACGAAATAATCATAGACTATTAG 4605 43.34 MAAKHKKEEEETAARKNGSGGGLQRSYFDVLGICCASEISVIENILKPLEGVKEVTVIVTTRTVIVVHDNLLISQSQIVKALNQARLEANVRAYGEHKNHRKKWPSPYSAASGLLLLLSLLKFVNPIFQWLAVAAVAVGIWPIALKSFAAIRNFRIDINILALIAVVGTIAMKDYLEAATIVFLFSIAEWLESRASHKANAVMSSLLSIAPQKAVLADSGEVVATDEVKLGSLLAVKPGEVIPIDGIVVEGKCEVDEKTLTGESFPVAKQKNSIVWAGTINLNGYVTVKTTVLSQDCVVAKMAKLVEDAQSNKSRIQRFIDKCAKYYTPAVLIVSTCIAVIPAALRLHNRKLWFHLALVVLVSACPCALILSTPVATFCALTKAATSGLLIKGGDYLETLARIKVMAFDKTGTITRGEFTVTKFQALDQINISLNTLLYWVSSIESKSSHPMATALVDHGRSLSIDPKPETVDDFQNFPGEGVHGKIDGKDIYIGNRKIAIRANCTTVPEIKDDAQDGRTVGYIFCGSTPAGIFSLSDTCRRGAKEAMEELQSLGIKTAMLTGDCSASALQAQKELGKALQIVHAELLPEDKTRLINDFKREGRTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMSNDIRKIPKVIQLARRARMKVIENVILAITPRIAILGLAFAGHPLVWAAVLADVGTCVLVILNSMLLLRGTGKHTGKAGKSAATECTYKRECCNVNSNFDQHDNYVLNLESAVDGFHSSNHLVREDCCASKKIQEGSLSQNCASKCCSRTTNSSSCKKIKSVESTSKQDDSAGCVKLNERGCCINNNQSAQRDRHTYSSSTDHQIKDNCCSQQNIPEFCLPQKCASKCQSKTSISSSCEEIKCTKSTLMLDGSAGSAELYESGCCTRSSKSVQLDHHIIQIPDANASNSHSCSPGHHIRNDCCSQENTQNISLPQSQCQSKTCNSSSCQKTKCGDSTVRQDECTGSVELQDQKNCNIGRFDTSDFDLESQGKLNNNFIGPCASVSLCTKDNCCDKSAKIGECAKDDGCQEVKPRLCNAACCEENGGSNRDDGEGNLKLPQSKCQSKTCNSSSCGKTKCGDSMVRQEECTGSLELQDQNHCNLRRFNTSNFDLESLNKNFIGPCRSVSLCTEDKCCDNGAKTGELAKADGCQEVKLHPCNATCCEKNGGSNSNDDKDYLNLPESKCQSKTSNSSSCGEFTLRQGEGIGSLKLQDQNYCNLGRFDTSDFDLDSQEKLNNNFIGPCRPVSLCTEDKCCDKGAKIGKHGKADGCQEVKLRPCNATCCENNGESNRDGGEDPLNLPQSKCQSKTCNSSSCTDSAVRQDECIGSLELQNQKHCNLGRFDTFDLDLESKEKLNNNCRPCRAVSCTEDKCSNKVAKIGDHADADGCEEVKLGLCNATCCEKKRNDRDGDEHHSNLQHEGVQHDLKACHGDFGGAFHTSEAMEKRETINGCKSCKKEWPELKIGQSCAGLEKREVGGCCKSYMKECCRKKHGDIGTTVGGGLNEIIIDY 1534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46443646 46453572 + evm.model.ptg000008l.486 HCH8g1049 550147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1049 1534 Gene3D - 398 659 IPR023214 -
HCH8g1049 1534 ProSiteProfiles Heavy-metal-associated domain profile. 24 90 IPR006121 GO:0046872(InterPro)
HCH8g1049 1534 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 401 IPR023298 -
HCH8g1049 1534 Gene3D - 418 540 IPR023299 GO:0000166(InterPro)
HCH8g1049 1534 Pfam haloacid dehalogenase-like hydrolase 403 622 - -
HCH8g1049 1534 SUPERFAMILY HMA, heavy metal-associated domain 21 94 IPR036163 GO:0046872(InterPro)
HCH8g1049 1534 ProSitePatterns E1-E2 ATPases phosphorylation site. 409 415 IPR018303 -
HCH8g1049 1534 NCBIfam cadmium family heavy metal-translocating P-type ATPase 158 713 - -
HCH8g1049 1534 Gene3D - 196 310 - -
HCH8g1049 1534 SUPERFAMILY HAD-like 406 709 IPR036412 -
HCH8g1049 1534 SUPERFAMILY Calcium ATPase, transduction domain A 221 306 IPR008250 -
HCH8g1049 1534 Gene3D - 22 93 - -
HCH8g1049 1534 SFLD p-type atpase 390 660 IPR044492 -
HCH8g1049 1534 MobiDBLite consensus disorder prediction 1 21 - -
HCH8g1049 1534 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 23 961 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
HCH8g1049 1534 FunFam Putative cadmium/zinc-transporting ATPase 3 418 540 - -
HCH8g1049 1534 MobiDBLite consensus disorder prediction 1 15 - -
HCH8g1049 1534 FunFam Putative cadmium/zinc-transporting ATPase 3 20 93 - -
HCH8g1049 1534 PRINTS P-type cation-transporting ATPase superfamily signature 554 564 - -
HCH8g1049 1534 PRINTS P-type cation-transporting ATPase superfamily signature 256 270 - -
HCH8g1049 1534 PRINTS P-type cation-transporting ATPase superfamily signature 407 421 - -
HCH8g1049 1534 PRINTS P-type cation-transporting ATPase superfamily signature 632 644 - -
HCH8g1049 1534 PRINTS P-type cation-transporting ATPase superfamily signature 608 627 - -
HCH8g1049 1534 FunFam Copper-transporting ATPase 1, putative 196 310 - -
HCH8g1049 1534 SFLD Haloacid Dehalogenase 390 660 - -
HCH8g1049 1534 NCBIfam heavy metal translocating P-type ATPase 158 711 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
HCH8g1049 1534 CDD P-type_ATPase_HM 108 710 - -
HCH8g1049 1534 ProSitePatterns Hypothetical cof family signature 2. 608 630 - -
HCH8g1049 1534 Pfam E1-E2 ATPase 218 386 - -
HCH8g1049 1534 NCBIfam HAD-IC family P-type ATPase 181 685 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0317 HCH-Chr14:31863260 HCH8g1049 HCH-Chr8:46443646 2.50E-47 dispersed
HCH8g1049 HCH-Chr8:46443646 HCH8g1326 HCH-Chr8:48216710 5.90E-18 dispersed
HCH8g1043 HCH-Chr8:46378910 HCH8g1049 HCH-Chr8:46443646 4.30E-19 proximal
HCH11g0988 HCH-Chr11:41425180 HCH8g1049 HCH-Chr8:46443646 5.10E-65 transposed
HCH12g0464 HCH-Chr12:2728258 HCH8g1049 HCH-Chr8:46443646 2.90E-62 transposed
HCH14g1171 HCH-Chr14:38516124 HCH8g1049 HCH-Chr8:46443646 4.40E-70 transposed
HCH2g1385 HCH-Chr2:55631797 HCH8g1049 HCH-Chr8:46443646 1.00E-62 transposed
HCH5g0502 HCH-Chr5:3416009 HCH8g1049 HCH-Chr8:46443646 3.30E-67 transposed
HCH9g0913 HCH-Chr9:6734602 HCH8g1049 HCH-Chr8:46443646 8.60E-63 transposed
HCH10g0230 HCH-Chr10:1926466 HCH8g1049 HCH-Chr8:46443646 1.20E-292 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1049 K01534 - csv:101211188 1291.17