Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1058 ATGAGAGCTGCTGTAAGCAAATTGACCCAGAAAGAATCTGGCAAATGCTCACACTCCAAGTTGGGAACCAGTTCAAAACTAATTTTACCTCTAAAGTTGAAAAGGCGTAGCAAAACTTCCCATTCCAAACAGAAAAAACCAAGAATTAAATCGTATGCACAGTCAATTGATTCAACATTCAAAGGTAGACCTCTTCCTAAATCCTTGAACAAAGGGAATAAAAATGTGACAATCAGGCAATCGAGTGGTAGTAAATTTTTGCTAAAAAAACTTGACAAAAAGTCTTCCAAGCAGTTATTTTTGTCAAGGCTTCAAGATGGAGAATCCCCGCCAACTAATTCTAAAGGGGATGCAGAAAAGGTTGAGCCAGAGGCCAAGATAAACCAACAACGGAAGAGGAAGAATAAAAGGAAAAGGGAAAAGGTGGAGTTAGATGAAGCCTCTCGCCTACAGAGGAGAATAAGATACCTTATGATTAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGGCAGAGTCGAGAAAAAATCAAGCCAGAAAAGGAACTTCAGAGAGCTAGGAAGCAGATATTAAAGTGCAAACTAGGAATTCGAGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGCTATTGCTTCAGATGGATCTGTCTACCATGAACATATATTCTGTGCAAAATGCAAGTTGCGTGAGGCTTTTCCAGACAATGATATTATACTTTGTGATGGAACATGCAACTGTGCATTCCACCAAAAATGTCTTGACCCACCATTGGATAGTGATCATATTCCTCAAGGAGATCAGGGTTGGTTATGCAAATTTTGTGAGTGCAAGATGGAAATATTAGAAGGAATGAATGCTCATCTTGGTACTCACTTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCATTCCCAGATGGTGGAAATTCATTATTTAATCATGAGGAAAATTGGCCTTCTGATGATTCTGACGATGATGACTATGATCCAGATAAGAAGGAAAAGAGCTACAACTTAAGTGGGGAAGAAAATGAGGAGCATGTTTTGGACGAGTCAAGTAGTTCGACCAGCTTGAGTTGGTCTTTAGATGGTGAGGATTTTTCTACTAGAGATGGTGTTATATGTGAAGATCACTGTGGTGTTGGTAGCAGCATAGTTTCTGATGAATCTGCTGAAGAGGGCATCATATGTGGCCGCAGGCAGCGACAAGCTGTTGATTATACAAAATTATATGTTGAAATGTTTGGAAAGGATGGCCCGGCATATGAACAAGTTAGTGAAGATGAAGACTGGGGACCTTCAAAAAGACGACGGAGAGAGAAGGAATGTGATGCTGCAAGTACTCTTATGACTCTTTGTGAAACTGAAAAGAAGAGTCAAGCCTTTGACATGGAAGGAGACAAAAAACTACTCGATTCTCATAGTAGAAGGTCATTTTTCAGAATTCCTCATCATGCAGTTGAGAAACTTCGCCAAGTGTTTGCGGAAAATGAACTTCCCTCTAGAGTAGTCAAGGAGAACCTTTCGAAAGAACTGGGTCTTGCTGCTGAGAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCTCTGAGAACTAGAAAGGCAGAGGGAGCAATACAATTTCAGAATTCTAGTAGAAACTCTAAGGAATTTCGATCAGCAGATTTAAACGAAAAGGCTGCTAATTATGTGGCTTCAGAGGACACATCAGTAAAAGGTCTGCAGTTGAAGTCACAGAGTAACCATTTCAAGAAAAAGCAGCGCAGAAGACTGTCACTTGCATCTTCCAATAGTAACAAGGAAGTCGTTGATTTTGATGATGATATAAGCTTGAAGAATCTCCTGAAAAACAGAAGAAAGAAGGTGAAGAAGAAGAAGAAGGGGGTTGTTAATTCTGCAGCTAAAGATGGATTTCAAGATGCAGAAGTGGAGATGGAGAAGCTTTGTAAAGTTAAGGATAGATTAGAAATCATGAAGCAGAGATTACTTAGATTATCAAATAAGAAAGAAGAGAGAGTAGATAAATCACACATCTTTGAACAGTCTGTTGTATACGTTCCCATGGCAGTGTTAAAAGAAAAGGCTTGA 2148 39.66 MRAAVSKLTQKESGKCSHSKLGTSSKLILPLKLKRRSKTSHSKQKKPRIKSYAQSIDSTFKGRPLPKSLNKGNKNVTIRQSSGSKFLLKKLDKKSSKQLFLSRLQDGESPPTNSKGDAEKVEPEAKINQQRKRKNKRKREKVELDEASRLQRRIRYLMIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRARKQILKCKLGIRDAIRQLDLLGSVGCIEDSAIASDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDSDHIPQGDQGWLCKFCECKMEILEGMNAHLGTHFSLNISWEDVFKEEAAFPDGGNSLFNHEENWPSDDSDDDDYDPDKKEKSYNLSGEENEEHVLDESSSSTSLSWSLDGEDFSTRDGVICEDHCGVGSSIVSDESAEEGIICGRRQRQAVDYTKLYVEMFGKDGPAYEQVSEDEDWGPSKRRRREKECDAASTLMTLCETEKKSQAFDMEGDKKLLDSHSRRSFFRIPHHAVEKLRQVFAENELPSRVVKENLSKELGLAAEKVSKWFKNARYSALRTRKAEGAIQFQNSSRNSKEFRSADLNEKAANYVASEDTSVKGLQLKSQSNHFKKKQRRRLSLASSNSNKEVVDFDDDISLKNLLKNRRKKVKKKKKGVVNSAAKDGFQDAEVEMEKLCKVKDRLEIMKQRLLRLSNKKEERVDKSHIFEQSVVYVPMAVLKEKA 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46515831 46522018 + evm.model.ptg000008l.477 HCH8g1058 550156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1058 715 SUPERFAMILY Homeodomain-like 492 555 IPR009057 -
HCH8g1058 715 MobiDBLite consensus disorder prediction 328 380 - -
HCH8g1058 715 SMART HOX_1 494 556 IPR001356 GO:0003677(InterPro)
HCH8g1058 715 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 32 711 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
HCH8g1058 715 CDD PHD_PRHA_like 237 289 IPR045876 -
HCH8g1058 715 MobiDBLite consensus disorder prediction 113 129 - -
HCH8g1058 715 FunFam pathogenesis-related homeodomain protein 494 558 - -
HCH8g1058 715 SUPERFAMILY FYVE/PHD zinc finger 227 295 IPR011011 -
HCH8g1058 715 MobiDBLite consensus disorder prediction 10 24 - -
HCH8g1058 715 Coils Coil 127 147 - -
HCH8g1058 715 Coils Coil 672 692 - -
HCH8g1058 715 ProSitePatterns Zinc finger PHD-type signature. 238 289 IPR019786 -
HCH8g1058 715 SMART PHD_3 237 290 IPR001965 -
HCH8g1058 715 MobiDBLite consensus disorder prediction 348 369 - -
HCH8g1058 715 Gene3D - 494 559 - -
HCH8g1058 715 MobiDBLite consensus disorder prediction 1 75 - -
HCH8g1058 715 MobiDBLite consensus disorder prediction 102 142 - -
HCH8g1058 715 Pfam PHD-finger 238 289 IPR019787 -
HCH8g1058 715 CDD homeodomain 495 553 IPR001356 GO:0003677(InterPro)
HCH8g1058 715 ProSiteProfiles Zinc finger PHD-type profile. 235 292 IPR019787 -
HCH8g1058 715 FunFam pathogenesis-related homeodomain protein-like 229 289 - -
HCH8g1058 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 286 IPR013083 -
HCH8g1058 715 Pfam Homeodomain 502 547 IPR001356 GO:0003677(InterPro)
HCH8g1058 715 ProSiteProfiles 'Homeobox' domain profile. 492 552 IPR001356 GO:0003677(InterPro)
HCH8g1058 715 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1845 HCH-Chr4:47913176 HCH8g1058 HCH-Chr8:46515831 1.20E-55 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34046 PF00628 PHD 3.20E-09 CL0390 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1058 - - - 0.0