Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1061 ATGTATCCGTCACGACCACCACCACCGTCTTCGTGTCGTGATATCGACAATAATATCATAGACGAGTACGAGAATTACTGGGGTGCCGATATCTTCCTACCAACTGAGGAATTCAACAGTTGGGGATTGGACGAGGCGTTATCGAGTTACTATGATTCGAGCTCGCCGGAGGGAGTTTTGTCGGCATCGGCGGCGTCGAAGAATATAGTAGCAGAGAGGAACAGGAGGAAAAAGCTGAATGATAGGCTCTTTGCACTTAGATCTGTGGTCCCTAATATAACCAAGATGGACAAGGCTTCTATAATAAAGGATGCGATTGCTTACATAGAAGAATTGCATGAGCAAGAGAAGAGAATTGAAGGTGAAGTCATGCAGCTGGAATCAGTAAAGTTGAAGAAGATAAGTGGATATGGTTTTGAACAAGAATTTCCATTGTTGATCAGATCAAAGAAGAAGAAAACAGAACACGTTAGCTATGATTCTACTGGTTTAAGAACTTTCCCAATTGAAATTCTAGATCTAAGTGTGACATATATGGGGGACAAAACAATAGTTGTCAGCTTGACATGCAGTAAAAGAGCAGACACAGTTGTTAAACTCTGTCGAGTTTTTGAATCACTCAAACTCAAAATCATTACTGCTAATATCACTGCTGTCTCTGGAAAGCTTTTGAAGACTGTCTTCATTGAGGCTGAGCAACAGGAGAGGGAGATGTTAAAGATTAAAATACAAGCAGCCATTGCAGTTCTCAATGATCCACAGAGCCCAATGAGCATCTAA 780 41.28 MYPSRPPPPSSCRDIDNNIIDEYENYWGADIFLPTEEFNSWGLDEALSSYYDSSSPEGVLSASAASKNIVAERNRRKKLNDRLFALRSVVPNITKMDKASIIKDAIAYIEELHEQEKRIEGEVMQLESVKLKKISGYGFEQEFPLLIRSKKKKTEHVSYDSTGLRTFPIEILDLSVTYMGDKTIVVSLTCSKRADTVVKLCRVFESLKLKIITANITAVSGKLLKTVFIEAEQQEREMLKIKIQAAIAVLNDPQSPMSI 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46542047 46544338 - evm.model.ptg000008l.474 HCH8g1061 550159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1061 259 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 63 240 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH8g1061 259 SMART finulus 69 118 IPR011598 GO:0046983(InterPro)
HCH8g1061 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983(InterPro)
HCH8g1061 259 Gene3D - 61 128 IPR036638 GO:0046983(InterPro)
HCH8g1061 259 Coils Coil 109 129 - -
HCH8g1061 259 Coils Coil 62 82 - -
HCH8g1061 259 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 60 129 - -
HCH8g1061 259 Pfam Helix-loop-helix DNA-binding domain 68 112 IPR011598 GO:0046983(InterPro)
HCH8g1061 259 Coils Coil 229 249 - -
HCH8g1061 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 127 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1214 HCH-Chr2:54572359 HCH8g1061 HCH-Chr8:46542047 3.40E-18 dispersed
HCH7g1715 HCH-Chr7:48968235 HCH8g1061 HCH-Chr8:46542047 2.80E-11 dispersed
HCH8g1061 HCH-Chr8:46542047 HCH9g0022 HCH-Chr9:154219 1.10E-12 dispersed
HCH8g0365 HCH-Chr8:32998465 HCH8g1061 HCH-Chr8:46542047 5.60E-112 transposed
HCH10g0215 HCH-Chr10:1782692 HCH8g1061 HCH-Chr8:46542047 5.90E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34048 PF00010 HLH 1.60E-11 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1061 - - - 0.0